miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 54960 0.74 0.198011
Target:  5'- aCGGGCCGCUCuuuGACGGCagCGCgCa- -3'
miRNA:   3'- aGCCCGGCGAG---UUGCCGagGCGgGag -5'
6501 5' -63.1 NC_001847.1 + 103417 0.74 0.198011
Target:  5'- cCGcGGCCGCUCcgcAGCGGCgcgcggcCCGCgCCUCc -3'
miRNA:   3'- aGC-CCGGCGAG---UUGCCGa------GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 604 0.74 0.198011
Target:  5'- cCGcGGCCGCUCcgcAGCGGCgcgcggcCCGCgCCUCc -3'
miRNA:   3'- aGC-CCGGCGAG---UUGCCGa------GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 104757 0.73 0.212695
Target:  5'- cUCGGGCCGC-CGGC-GCUC-GUCCUCg -3'
miRNA:   3'- -AGCCCGGCGaGUUGcCGAGgCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 1944 0.73 0.212695
Target:  5'- cUCGGGCCGC-CGGC-GCUC-GUCCUCg -3'
miRNA:   3'- -AGCCCGGCGaGUUGcCGAGgCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 125023 0.73 0.217794
Target:  5'- cCGGGcCCGCUCGccgcgaagGCGGCUuuccCCGCCgCUUg -3'
miRNA:   3'- aGCCC-GGCGAGU--------UGCCGA----GGCGG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 32996 0.73 0.222997
Target:  5'- gCGGGCCGCgccgccguggUCGcGCGGagugccgCCGCCCUCu -3'
miRNA:   3'- aGCCCGGCG----------AGU-UGCCga-----GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 21968 0.73 0.222997
Target:  5'- cUGGGCCGCggCGcCGGUUgCCGCCCg- -3'
miRNA:   3'- aGCCCGGCGa-GUuGCCGA-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 45711 0.73 0.222997
Target:  5'- gUGGGCgGCUCA---GCUCCGCCgUCa -3'
miRNA:   3'- aGCCCGgCGAGUugcCGAGGCGGgAG- -5'
6501 5' -63.1 NC_001847.1 + 101975 0.73 0.228305
Target:  5'- cCGGccaGCCGCUgCAGCGGCgcaaccgCCGCgCUCg -3'
miRNA:   3'- aGCC---CGGCGA-GUUGCCGa------GGCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 47531 0.73 0.23372
Target:  5'- cCGGgcgccaaagccGCCGuCUCAACGGCgCCGgCCUCg -3'
miRNA:   3'- aGCC-----------CGGC-GAGUUGCCGaGGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 131383 0.73 0.23372
Target:  5'- cCGGGCUGCUCGACGGCgacgaaGCgCUg -3'
miRNA:   3'- aGCCCGGCGAGUUGCCGagg---CGgGAg -5'
6501 5' -63.1 NC_001847.1 + 31949 0.73 0.235916
Target:  5'- gCGGacgagccuGCCGCggCGGCGGCgggccccguggacgCCGCCCUCg -3'
miRNA:   3'- aGCC--------CGGCGa-GUUGCCGa-------------GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2692 0.72 0.239242
Target:  5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3'
miRNA:   3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5'
6501 5' -63.1 NC_001847.1 + 15405 0.72 0.239242
Target:  5'- -gGGGCCGggUuuCGGCU-CGCCCUCg -3'
miRNA:   3'- agCCCGGCgaGuuGCCGAgGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 105505 0.72 0.239242
Target:  5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3'
miRNA:   3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13474 0.72 0.239242
Target:  5'- cUCGGGCCGCaccccaCAGCGGCg--GCCUUCc -3'
miRNA:   3'- -AGCCCGGCGa-----GUUGCCGaggCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 34552 0.72 0.239242
Target:  5'- cCGGGCUGCUCGgccgcugcagcgGCGGCagCGCCUg- -3'
miRNA:   3'- aGCCCGGCGAGU------------UGCCGagGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 105629 0.72 0.244873
Target:  5'- gCGGGCgaGCUCuGCGGCcgaagcgCCGCCCg- -3'
miRNA:   3'- aGCCCGg-CGAGuUGCCGa------GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 103581 0.72 0.244873
Target:  5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3'
miRNA:   3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.