miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 133172 0.66 0.540621
Target:  5'- cCGGGgaggCGCU-GGCGGCgCCGCCCg- -3'
miRNA:   3'- aGCCCg---GCGAgUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 124402 0.66 0.569593
Target:  5'- -gGGGCCGCgg---GGCcCCGCCCc- -3'
miRNA:   3'- agCCCGGCGaguugCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 69629 0.66 0.559887
Target:  5'- cCGGGCgGCcgCAcuGCGcGCgCCGCCC-Ca -3'
miRNA:   3'- aGCCCGgCGa-GU--UGC-CGaGGCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 105979 0.66 0.56862
Target:  5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3'
miRNA:   3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5'
6501 5' -63.1 NC_001847.1 + 73949 0.66 0.559887
Target:  5'- cCGGaGaCCuCUCucACGGCgaccuagCCGCCCUCc -3'
miRNA:   3'- aGCC-C-GGcGAGu-UGCCGa------GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 102085 0.66 0.579339
Target:  5'- gCGGGCCGCgcgcgacccggUCAauaaacuccuGCGccGCgUCCGCgCCUCg -3'
miRNA:   3'- aGCCCGGCG-----------AGU----------UGC--CG-AGGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 2664 0.66 0.539663
Target:  5'- uUCGcccGGCgGCUCGGCcggcaucGGCUCguccuccgCGCCCUCc -3'
miRNA:   3'- -AGC---CCGgCGAGUUG-------CCGAG--------GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 105178 0.66 0.567648
Target:  5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3'
miRNA:   3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 78295 0.66 0.579339
Target:  5'- gCGaGGCggUGCUCgGGCGGCUgggCCGCCCc- -3'
miRNA:   3'- aGC-CCG--GCGAG-UUGCCGA---GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 26371 0.66 0.550228
Target:  5'- gUGGGCCGCcCGGCaGCgUCCggcGCCCa- -3'
miRNA:   3'- aGCCCGGCGaGUUGcCG-AGG---CGGGag -5'
6501 5' -63.1 NC_001847.1 + 36841 0.66 0.579339
Target:  5'- -gGGGCuggcggacgugCGCUCGGCGGCggCCGagCUCu -3'
miRNA:   3'- agCCCG-----------GCGAGUUGCCGa-GGCggGAG- -5'
6501 5' -63.1 NC_001847.1 + 40179 0.66 0.569593
Target:  5'- -gGGGCUGCgcgCGGCGGaacggCCGCCg-- -3'
miRNA:   3'- agCCCGGCGa--GUUGCCga---GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 11572 0.66 0.569593
Target:  5'- cCGGccCCGCUCGcgGCGGCcCCGgCCCa- -3'
miRNA:   3'- aGCCc-GGCGAGU--UGCCGaGGC-GGGag -5'
6501 5' -63.1 NC_001847.1 + 76535 0.66 0.540621
Target:  5'- gCGGGCgCGCUggcCAGCGuGUUaCUGCCCa- -3'
miRNA:   3'- aGCCCG-GCGA---GUUGC-CGA-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 52745 0.66 0.559887
Target:  5'- aUGGGCguccCGgaCaAGCGGC-CCGCCCUg -3'
miRNA:   3'- aGCCCG----GCgaG-UUGCCGaGGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 51402 0.66 0.559887
Target:  5'- gCGGcGCCGaaccuugCGGCGGCgcagacggagCCGCCCg- -3'
miRNA:   3'- aGCC-CGGCga-----GUUGCCGa---------GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 105612 0.66 0.579339
Target:  5'- -aGGGCCGCgagcGCGGCcgccagCCGCgCCg- -3'
miRNA:   3'- agCCCGGCGagu-UGCCGa-----GGCG-GGag -5'
6501 5' -63.1 NC_001847.1 + 62120 0.66 0.569593
Target:  5'- cCGcGGCCGCUgCcGCGGCcugguUCCGCgCC-Cg -3'
miRNA:   3'- aGC-CCGGCGA-GuUGCCG-----AGGCG-GGaG- -5'
6501 5' -63.1 NC_001847.1 + 25529 0.66 0.579339
Target:  5'- gCGGuuGgCGCgCAcCGGCUCCGCgaCCUCg -3'
miRNA:   3'- aGCC--CgGCGaGUuGCCGAGGCG--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 56886 0.66 0.559887
Target:  5'- aCGGGcCCGCcggCGACGGCgaCGCCg-- -3'
miRNA:   3'- aGCCC-GGCGa--GUUGCCGagGCGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.