miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 18977 0.66 0.540621
Target:  5'- gCGcGGCCGCggCGcccGCGGCcgCCaGCgCCUCg -3'
miRNA:   3'- aGC-CCGGCGa-GU---UGCCGa-GG-CG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 116587 0.66 0.563764
Target:  5'- aCGGGCCGgUCAccgagccccgcuacuACGGCcuggCCGgcaCCCUg -3'
miRNA:   3'- aGCCCGGCgAGU---------------UGCCGa---GGC---GGGAg -5'
6501 5' -63.1 NC_001847.1 + 69629 0.66 0.559887
Target:  5'- cCGGGCgGCcgCAcuGCGcGCgCCGCCC-Ca -3'
miRNA:   3'- aGCCCGgCGa-GU--UGC-CGaGGCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 56886 0.66 0.559887
Target:  5'- aCGGGcCCGCcggCGACGGCgaCGCCg-- -3'
miRNA:   3'- aGCCC-GGCGa--GUUGCCGagGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 51402 0.66 0.559887
Target:  5'- gCGGcGCCGaaccuugCGGCGGCgcagacggagCCGCCCg- -3'
miRNA:   3'- aGCC-CGGCga-----GUUGCCGa---------GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 53617 0.66 0.540621
Target:  5'- gCGGGCgGCggGGUGGCaCCGCCCg- -3'
miRNA:   3'- aGCCCGgCGagUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 2664 0.66 0.539663
Target:  5'- uUCGcccGGCgGCUCGGCcggcaucGGCUCguccuccgCGCCCUCc -3'
miRNA:   3'- -AGC---CCGgCGAGUUG-------CCGAG--------GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 80908 0.66 0.559887
Target:  5'- gCGuGGCCGCccaAGCGGCcguggCCGCCgUg -3'
miRNA:   3'- aGC-CCGGCGag-UUGCCGa----GGCGGgAg -5'
6501 5' -63.1 NC_001847.1 + 87701 0.66 0.559887
Target:  5'- gCGGcGCCGCggCGGCGGCgaagCCGacgaCgUCg -3'
miRNA:   3'- aGCC-CGGCGa-GUUGCCGa---GGCg---GgAG- -5'
6501 5' -63.1 NC_001847.1 + 134241 0.66 0.559887
Target:  5'- gCGGGCgGCggcCGGCGGCcgcggCgGCCC-Cg -3'
miRNA:   3'- aGCCCGgCGa--GUUGCCGa----GgCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 23311 0.66 0.540621
Target:  5'- cUCGGcGCCGCUgAGCcGCgccaCGUCCUUg -3'
miRNA:   3'- -AGCC-CGGCGAgUUGcCGag--GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 9810 0.66 0.554086
Target:  5'- --cGGCCGCUgGcguucagcGCGGCUCCgaaaacgcccaaggcGCCCUg -3'
miRNA:   3'- agcCCGGCGAgU--------UGCCGAGG---------------CGGGAg -5'
6501 5' -63.1 NC_001847.1 + 133172 0.66 0.540621
Target:  5'- cCGGGgaggCGCU-GGCGGCgCCGCCCg- -3'
miRNA:   3'- aGCCCg---GCGAgUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 48392 0.66 0.546379
Target:  5'- cCGGGCCGggcCUCGGCGGCaaagcgggacgcgUCGCCggcgCUCg -3'
miRNA:   3'- aGCCCGGC---GAGUUGCCGa------------GGCGG----GAG- -5'
6501 5' -63.1 NC_001847.1 + 26371 0.66 0.550228
Target:  5'- gUGGGCCGCcCGGCaGCgUCCggcGCCCa- -3'
miRNA:   3'- aGCCCGGCGaGUUGcCG-AGG---CGGGag -5'
6501 5' -63.1 NC_001847.1 + 73949 0.66 0.559887
Target:  5'- cCGGaGaCCuCUCucACGGCgaccuagCCGCCCUCc -3'
miRNA:   3'- aGCC-C-GGcGAGu-UGCCGa------GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 52745 0.66 0.559887
Target:  5'- aUGGGCguccCGgaCaAGCGGC-CCGCCCUg -3'
miRNA:   3'- aGCCCG----GCgaG-UUGCCGaGGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 39688 0.66 0.556984
Target:  5'- cCGGGCCGUugacccuaccguuaUCGGaucUGGCUCUGCgCUg -3'
miRNA:   3'- aGCCCGGCG--------------AGUU---GCCGAGGCGgGAg -5'
6501 5' -63.1 NC_001847.1 + 76535 0.66 0.540621
Target:  5'- gCGGGCgCGCUggcCAGCGuGUUaCUGCCCa- -3'
miRNA:   3'- aGCCCG-GCGA---GUUGC-CGA-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 91682 0.66 0.531071
Target:  5'- cUGcGGCUGCggcuGCGGCUCCcgcuucGCUCUCg -3'
miRNA:   3'- aGC-CCGGCGagu-UGCCGAGG------CGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.