Results 1 - 20 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 5' | -63.1 | NC_001847.1 | + | 103581 | 0.72 | 0.244873 |
Target: 5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3' miRNA: 3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 104757 | 0.73 | 0.212695 |
Target: 5'- cUCGGGCCGC-CGGC-GCUC-GUCCUCg -3' miRNA: 3'- -AGCCCGGCGaGUUGcCGAGgCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 45711 | 0.73 | 0.222997 |
Target: 5'- gUGGGCgGCUCA---GCUCCGCCgUCa -3' miRNA: 3'- aGCCCGgCGAGUugcCGAGGCGGgAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 32996 | 0.73 | 0.222997 |
Target: 5'- gCGGGCCGCgccgccguggUCGcGCGGagugccgCCGCCCUCu -3' miRNA: 3'- aGCCCGGCG----------AGU-UGCCga-----GGCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 21968 | 0.73 | 0.222997 |
Target: 5'- cUGGGCCGCggCGcCGGUUgCCGCCCg- -3' miRNA: 3'- aGCCCGGCGa-GUuGCCGA-GGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 31949 | 0.73 | 0.235916 |
Target: 5'- gCGGacgagccuGCCGCggCGGCGGCgggccccguggacgCCGCCCUCg -3' miRNA: 3'- aGCC--------CGGCGa-GUUGCCGa-------------GGCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 13474 | 0.72 | 0.239242 |
Target: 5'- cUCGGGCCGCaccccaCAGCGGCg--GCCUUCc -3' miRNA: 3'- -AGCCCGGCGa-----GUUGCCGaggCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 105505 | 0.72 | 0.239242 |
Target: 5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3' miRNA: 3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 77617 | 0.72 | 0.244873 |
Target: 5'- gCGGcGCCGCUgGgcgaggACGGCgcgCCGCCCg- -3' miRNA: 3'- aGCC-CGGCGAgU------UGCCGa--GGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 115796 | 0.74 | 0.198011 |
Target: 5'- gCGGaGCCGCU--GCGGCUCCGCgCg- -3' miRNA: 3'- aGCC-CGGCGAguUGCCGAGGCGgGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 103417 | 0.74 | 0.198011 |
Target: 5'- cCGcGGCCGCUCcgcAGCGGCgcgcggcCCGCgCCUCc -3' miRNA: 3'- aGC-CCGGCGAG---UUGCCGa------GGCG-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 54960 | 0.74 | 0.198011 |
Target: 5'- aCGGGCCGCUCuuuGACGGCagCGCgCa- -3' miRNA: 3'- aGCCCGGCGAG---UUGCCGagGCGgGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 94245 | 0.77 | 0.115159 |
Target: 5'- gCGGcGCCGUggAGCGGCUCgCGCCCUg -3' miRNA: 3'- aGCC-CGGCGagUUGCCGAG-GCGGGAg -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 134377 | 0.77 | 0.118095 |
Target: 5'- cCGGcGCCGC-CGGCGGCgggCCGgCCUCg -3' miRNA: 3'- aGCC-CGGCGaGUUGCCGa--GGCgGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 92175 | 0.76 | 0.137225 |
Target: 5'- cCGGGCCgGC-CGGCGGC-CCGCCCc- -3' miRNA: 3'- aGCCCGG-CGaGUUGCCGaGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 69112 | 0.76 | 0.145646 |
Target: 5'- gCGGGCCGCguucucggCGuacguggucuuuggcGCGGCgUCCGCCUUCg -3' miRNA: 3'- aGCCCGGCGa-------GU---------------UGCCG-AGGCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 19448 | 0.75 | 0.171282 |
Target: 5'- aCGGGCCGCagc-CGGCUCuCGCCCcCg -3' miRNA: 3'- aGCCCGGCGaguuGCCGAG-GCGGGaG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 10396 | 0.74 | 0.184219 |
Target: 5'- -gGGGCCGCUUuauGACGGC-CCGUCCc- -3' miRNA: 3'- agCCCGGCGAG---UUGCCGaGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 81362 | 0.74 | 0.193316 |
Target: 5'- cUCGcGGCgGCU--GCGGUgcugCCGCCCUCg -3' miRNA: 3'- -AGC-CCGgCGAguUGCCGa---GGCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 80477 | 0.74 | 0.196121 |
Target: 5'- gUCGGGCCGCgcuccccguuccgCAgcGCGGCgCUGCCgCUCg -3' miRNA: 3'- -AGCCCGGCGa------------GU--UGCCGaGGCGG-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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