miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 111833 0.66 0.583248
Target:  5'- gUGGcGCgGCUCAGCGGCgccgagcuggaguuuUaCCGCUUUCu -3'
miRNA:   3'- aGCC-CGgCGAGUUGCCG---------------A-GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 114254 0.66 0.559887
Target:  5'- ---uGCCGCUgCGGgGGCgUCCGCCCa- -3'
miRNA:   3'- agccCGGCGA-GUUgCCG-AGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 100621 0.66 0.559887
Target:  5'- gCGGGCgGCgcaUCGcCGGCgCCGUCCg- -3'
miRNA:   3'- aGCCCGgCG---AGUuGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 13720 1.08 0.000674
Target:  5'- gUCGGGCCGCUCAACGGCUCCGCCCUCc -3'
miRNA:   3'- -AGCCCGGCGAGUUGCCGAGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 4629 0.66 0.579339
Target:  5'- gCGGGCgGCcCGcCGGCgcUCgCGCgCCUCa -3'
miRNA:   3'- aGCCCGgCGaGUuGCCG--AG-GCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 117538 0.66 0.579339
Target:  5'- aCGaGGCCGUgcgCAACcccuuuccgcgGGCcCCGCCCg- -3'
miRNA:   3'- aGC-CCGGCGa--GUUG-----------CCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 8158 0.66 0.579339
Target:  5'- -gGGGCUGCUUGGCuGGCcUCCaGCgUUCg -3'
miRNA:   3'- agCCCGGCGAGUUG-CCG-AGG-CGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 2799 0.66 0.579339
Target:  5'- -aGGGCCGCgagcGCGGCcgccagCCGCgCCg- -3'
miRNA:   3'- agCCCGGCGagu-UGCCGa-----GGCG-GGag -5'
6501 5' -63.1 NC_001847.1 + 130500 0.66 0.569593
Target:  5'- gUCGGGCgGU-----GGCUCCuGCCCUUc -3'
miRNA:   3'- -AGCCCGgCGaguugCCGAGG-CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 34140 0.66 0.559887
Target:  5'- gCGGcaguaacuGCCGCcgCGGCGGCaccuUCCGUCgCUCg -3'
miRNA:   3'- aGCC--------CGGCGa-GUUGCCG----AGGCGG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 86989 0.66 0.56862
Target:  5'- cCGGGCCggcgcgcgccgGCcCGGCGGUUaccugggCCGCgCCUCg -3'
miRNA:   3'- aGCCCGG-----------CGaGUUGCCGA-------GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 78631 0.66 0.569593
Target:  5'- gCGGGCCGUgaagCGgaaguucccGCGGCUCuCGUCUc- -3'
miRNA:   3'- aGCCCGGCGa---GU---------UGCCGAG-GCGGGag -5'
6501 5' -63.1 NC_001847.1 + 122773 0.66 0.579339
Target:  5'- cCGGGCCGUgcgcucCAGCaGGCUCCGgUggggcgcugaCUCg -3'
miRNA:   3'- aGCCCGGCGa-----GUUG-CCGAGGCgG----------GAG- -5'
6501 5' -63.1 NC_001847.1 + 3166 0.66 0.56862
Target:  5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3'
miRNA:   3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5'
6501 5' -63.1 NC_001847.1 + 107623 0.66 0.579339
Target:  5'- cUCGGgcguccccgccGCCGCcgCGGCGGCggCCGaggCCUCu -3'
miRNA:   3'- -AGCC-----------CGGCGa-GUUGCCGa-GGCg--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 49950 0.66 0.576411
Target:  5'- cCGGGCUGCcCGGCgccgaguacgcgcaGGCcgugCaCGCCCUCc -3'
miRNA:   3'- aGCCCGGCGaGUUG--------------CCGa---G-GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2365 0.66 0.567648
Target:  5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3'
miRNA:   3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 103408 0.66 0.559887
Target:  5'- aCGcGCCGCUCGACauagGGCUCguCGUCCa- -3'
miRNA:   3'- aGCcCGGCGAGUUG----CCGAG--GCGGGag -5'
6501 5' -63.1 NC_001847.1 + 42070 0.66 0.579339
Target:  5'- cUGGuGCCGCU--GCGGCgcaUCGgCCUCg -3'
miRNA:   3'- aGCC-CGGCGAguUGCCGa--GGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 110232 0.66 0.579339
Target:  5'- gCGGGCCGUgcuaaaCAugcGCGGCcugCuCGCCCg- -3'
miRNA:   3'- aGCCCGGCGa-----GU---UGCCGa--G-GCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.