miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 3436 0.67 0.502811
Target:  5'- gCaGGCCGC-CAcguGCGGCagCGCCCa- -3'
miRNA:   3'- aGcCCGGCGaGU---UGCCGagGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 3864 0.71 0.287407
Target:  5'- gCGGGCC-CUcCAGCGGCggCgGCCCgUCg -3'
miRNA:   3'- aGCCCGGcGA-GUUGCCGa-GgCGGG-AG- -5'
6501 5' -63.1 NC_001847.1 + 3979 0.68 0.456373
Target:  5'- gUGGGCCGUgagCAcgccagcGCGGCcaaguuaacagUCCGCCCc- -3'
miRNA:   3'- aGCCCGGCGa--GU-------UGCCG-----------AGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 4328 0.68 0.448417
Target:  5'- --cGGCCGCuUCGgccGCGGCcgccUCCGCCC-Cg -3'
miRNA:   3'- agcCCGGCG-AGU---UGCCG----AGGCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 4629 0.66 0.579339
Target:  5'- gCGGGCgGCcCGcCGGCgcUCgCGCgCCUCa -3'
miRNA:   3'- aGCCCGgCGaGUuGCCG--AG-GCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 5467 0.68 0.411504
Target:  5'- --cGGCCGCUCucugcggcggcggcAGCGGCcgCCGCaaCCUCg -3'
miRNA:   3'- agcCCGGCGAG--------------UUGCCGa-GGCG--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 5932 0.69 0.397439
Target:  5'- aUGGGCgGCggaCGACgGGC-CCGCCCg- -3'
miRNA:   3'- aGCCCGgCGa--GUUG-CCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 6950 0.72 0.268503
Target:  5'- aCGGGCCagGCgcggggucgCGGCGGCgcuUCCGCCCg- -3'
miRNA:   3'- aGCCCGG--CGa--------GUUGCCG---AGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 6987 0.66 0.583248
Target:  5'- gCGGGCCGCccagCAgauaaaacgcgacgaGCGGCcgcgcaUCCGCCa-- -3'
miRNA:   3'- aGCCCGGCGa---GU---------------UGCCG------AGGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 7904 0.67 0.484339
Target:  5'- gCGGGgCGCgCGGCGGCcgCCGCUuCUUc -3'
miRNA:   3'- aGCCCgGCGaGUUGCCGa-GGCGG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 8158 0.66 0.579339
Target:  5'- -gGGGCUGCUUGGCuGGCcUCCaGCgUUCg -3'
miRNA:   3'- agCCCGGCGAGUUG-CCG-AGG-CGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 8967 0.66 0.579339
Target:  5'- gCGGucGCCGCUCAucuuGCGGUuguggCCGCCg-- -3'
miRNA:   3'- aGCC--CGGCGAGU----UGCCGa----GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 9184 0.67 0.521583
Target:  5'- aCGGGCUuugcuuuagGCUCAugGGCgCCagcggGCCCa- -3'
miRNA:   3'- aGCCCGG---------CGAGUugCCGaGG-----CGGGag -5'
6501 5' -63.1 NC_001847.1 + 9810 0.66 0.554086
Target:  5'- --cGGCCGCUgGcguucagcGCGGCUCCgaaaacgcccaaggcGCCCUg -3'
miRNA:   3'- agcCCGGCGAgU--------UGCCGAGG---------------CGGGAg -5'
6501 5' -63.1 NC_001847.1 + 10396 0.74 0.184219
Target:  5'- -gGGGCCGCUUuauGACGGC-CCGUCCc- -3'
miRNA:   3'- agCCCGGCGAG---UUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 10601 0.67 0.484339
Target:  5'- gCGGGCCGg-CGcCGGCcCgCGCCCUg -3'
miRNA:   3'- aGCCCGGCgaGUuGCCGaG-GCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 11572 0.66 0.569593
Target:  5'- cCGGccCCGCUCGcgGCGGCcCCGgCCCa- -3'
miRNA:   3'- aGCCc-GGCGAGU--UGCCGaGGC-GGGag -5'
6501 5' -63.1 NC_001847.1 + 12355 0.72 0.256465
Target:  5'- gUGGGCCugGCUCGggagcgucgGCGGCUgCGgCCUCg -3'
miRNA:   3'- aGCCCGG--CGAGU---------UGCCGAgGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13119 0.67 0.521583
Target:  5'- cCGGGgCGCgcgGGCGGCgccgcgCCGCCUg- -3'
miRNA:   3'- aGCCCgGCGag-UUGCCGa-----GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 13216 0.84 0.035021
Target:  5'- gUCGGGCCGCUCGGCGaGCUCCGCg--- -3'
miRNA:   3'- -AGCCCGGCGAGUUGC-CGAGGCGggag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.