miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 125647 0.71 0.307344
Target:  5'- cUCGGGuCCGCUCGucGCGGCgcgCaGCUCUUc -3'
miRNA:   3'- -AGCCC-GGCGAGU--UGCCGa--GgCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 125023 0.73 0.217794
Target:  5'- cCGGGcCCGCUCGccgcgaagGCGGCUuuccCCGCCgCUUg -3'
miRNA:   3'- aGCCC-GGCGAGU--------UGCCGA----GGCGG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 124767 0.7 0.326176
Target:  5'- gCGGGCgGCaccggggggggcuuUCGGCGGCggCC-CCCUCg -3'
miRNA:   3'- aGCCCGgCG--------------AGUUGCCGa-GGcGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 124750 0.67 0.493535
Target:  5'- -aGGGCCGUcauaaAGCGGCcCCGCCg-- -3'
miRNA:   3'- agCCCGGCGag---UUGCCGaGGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 124402 0.66 0.569593
Target:  5'- -gGGGCCGCgg---GGCcCCGCCCc- -3'
miRNA:   3'- agCCCGGCGaguugCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 124253 0.71 0.27469
Target:  5'- gCGGGCCaaaGCUC--CGGCUCC-CCCUUc -3'
miRNA:   3'- aGCCCGG---CGAGuuGCCGAGGcGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 123800 0.68 0.457262
Target:  5'- gCGcGGCgGCggCAGCGGCaggcgCCGUCCUg -3'
miRNA:   3'- aGC-CCGgCGa-GUUGCCGa----GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 122872 0.66 0.583248
Target:  5'- gUGGGCgCGCUUggacucgcgggacugGugGGCaUCgcaGCCCUCg -3'
miRNA:   3'- aGCCCG-GCGAG---------------UugCCG-AGg--CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 122773 0.66 0.579339
Target:  5'- cCGGGCCGUgcgcucCAGCaGGCUCCGgUggggcgcugaCUCg -3'
miRNA:   3'- aGCCCGGCGa-----GUUG-CCGAGGCgG----------GAG- -5'
6501 5' -63.1 NC_001847.1 + 122009 0.69 0.373384
Target:  5'- --cGGCCGCggcaGGCGGCgcggcgCCGCCCg- -3'
miRNA:   3'- agcCCGGCGag--UUGCCGa-----GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 121780 0.66 0.579339
Target:  5'- gCGcGCCGUUC-GCGGCUggagCGUCCUCg -3'
miRNA:   3'- aGCcCGGCGAGuUGCCGAg---GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 121426 0.67 0.484339
Target:  5'- gCGGaGCCGUUgAGCGGCccgaCCGCCg-- -3'
miRNA:   3'- aGCC-CGGCGAgUUGCCGa---GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 119390 0.72 0.262428
Target:  5'- gCGGGCCGCccgCGuCGGCauaggCGCCCUCc -3'
miRNA:   3'- aGCCCGGCGa--GUuGCCGag---GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 117538 0.66 0.579339
Target:  5'- aCGaGGCCGUgcgCAACcccuuuccgcgGGCcCCGCCCg- -3'
miRNA:   3'- aGC-CCGGCGa--GUUG-----------CCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 117405 0.67 0.512161
Target:  5'- uUCGGuGCgCGCgguggacgcuUCGcGCGGCUgCGCCCUg -3'
miRNA:   3'- -AGCC-CG-GCG----------AGU-UGCCGAgGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 117044 0.67 0.478861
Target:  5'- -gGGGCuCGCcgaggaGGCGGaagccucgcccucgcCUCCGCCCUCc -3'
miRNA:   3'- agCCCG-GCGag----UUGCC---------------GAGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 116587 0.66 0.563764
Target:  5'- aCGGGCCGgUCAccgagccccgcuacuACGGCcuggCCGgcaCCCUg -3'
miRNA:   3'- aGCCCGGCgAGU---------------UGCCGa---GGC---GGGAg -5'
6501 5' -63.1 NC_001847.1 + 115796 0.74 0.198011
Target:  5'- gCGGaGCCGCU--GCGGCUCCGCgCg- -3'
miRNA:   3'- aGCC-CGGCGAguUGCCGAGGCGgGag -5'
6501 5' -63.1 NC_001847.1 + 115753 0.66 0.550228
Target:  5'- aUGGGCacacacacCGCUUGAUGGCggCgGCCCUg -3'
miRNA:   3'- aGCCCG--------GCGAGUUGCCGa-GgCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 115223 0.68 0.414018
Target:  5'- -aGGuGCgGCaggUCGGCGGCgaCGCCCUCg -3'
miRNA:   3'- agCC-CGgCG---AGUUGCCGagGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.