miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 134377 0.77 0.118095
Target:  5'- cCGGcGCCGC-CGGCGGCgggCCGgCCUCg -3'
miRNA:   3'- aGCC-CGGCGaGUUGCCGa--GGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 134241 0.66 0.559887
Target:  5'- gCGGGCgGCggcCGGCGGCcgcggCgGCCC-Cg -3'
miRNA:   3'- aGCCCGgCGa--GUUGCCGa----GgCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 134215 0.69 0.38931
Target:  5'- gCGGGCCGagggCGGCGGUgggaaggccgggUCCGCCUc- -3'
miRNA:   3'- aGCCCGGCga--GUUGCCG------------AGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 134036 0.69 0.381292
Target:  5'- -gGaGGCCGCg--GCGGCgCCGCCCg- -3'
miRNA:   3'- agC-CCGGCGaguUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 133664 0.68 0.414018
Target:  5'- -aGGcGCCGCcgCuGCGGCUCUGCCg-- -3'
miRNA:   3'- agCC-CGGCGa-GuUGCCGAGGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 133475 0.7 0.357906
Target:  5'- aCuGGCCGCgCGACGGC-CCgGCCgUCg -3'
miRNA:   3'- aGcCCGGCGaGUUGCCGaGG-CGGgAG- -5'
6501 5' -63.1 NC_001847.1 + 133172 0.66 0.540621
Target:  5'- cCGGGgaggCGCU-GGCGGCgCCGCCCg- -3'
miRNA:   3'- aGCCCg---GCGAgUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 132860 0.68 0.440538
Target:  5'- gCGGccccGCCGC-CGACGGCggcuuccgccgcgugCCGCCCg- -3'
miRNA:   3'- aGCC----CGGCGaGUUGCCGa--------------GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 132800 0.67 0.466199
Target:  5'- cCGGGCCgGCgCGGCGGgagCCGCCgCUg -3'
miRNA:   3'- aGCCCGG-CGaGUUGCCga-GGCGG-GAg -5'
6501 5' -63.1 NC_001847.1 + 132594 0.67 0.493535
Target:  5'- -aGGGCCGCcccggccCGGCGGCgggagcgCCGCCg-- -3'
miRNA:   3'- agCCCGGCGa------GUUGCCGa------GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 132112 0.68 0.457262
Target:  5'- cCGGGCCGC-CGAgcugcuCGGCgCgGCCCg- -3'
miRNA:   3'- aGCCCGGCGaGUU------GCCGaGgCGGGag -5'
6501 5' -63.1 NC_001847.1 + 131823 0.69 0.373384
Target:  5'- cCGGcGCCgGCggCAGCGGCgcccgcgCCGCgCUCg -3'
miRNA:   3'- aGCC-CGG-CGa-GUUGCCGa------GGCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 131383 0.73 0.23372
Target:  5'- cCGGGCUGCUCGACGGCgacgaaGCgCUg -3'
miRNA:   3'- aGCCCGGCGAGUUGCCGagg---CGgGAg -5'
6501 5' -63.1 NC_001847.1 + 131265 0.68 0.431016
Target:  5'- gCGGcGCCGCgCGACgGGCcgCCGCCgCUg -3'
miRNA:   3'- aGCC-CGGCGaGUUG-CCGa-GGCGG-GAg -5'
6501 5' -63.1 NC_001847.1 + 130502 0.68 0.456373
Target:  5'- gUCGGGCugaggcgCGCgagCGcCGGCgggCCGCCCg- -3'
miRNA:   3'- -AGCCCG-------GCGa--GUuGCCGa--GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 130500 0.66 0.569593
Target:  5'- gUCGGGCgGU-----GGCUCCuGCCCUUc -3'
miRNA:   3'- -AGCCCGgCGaguugCCGAGG-CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 130040 0.67 0.493535
Target:  5'- uUCGGccGCCGCUagcaaccuaggCGACGGCgacgcgucgCCGUCCUg -3'
miRNA:   3'- -AGCC--CGGCGA-----------GUUGCCGa--------GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 129609 0.71 0.27469
Target:  5'- cUGGGCCGC-CGucACGaGCgucgCCGCCCUa -3'
miRNA:   3'- aGCCCGGCGaGU--UGC-CGa---GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 129236 0.71 0.280991
Target:  5'- aUGGGCCcggGCgcacaaucugCGACGGCgcggCCGCCCUg -3'
miRNA:   3'- aGCCCGG---CGa---------GUUGCCGa---GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 128570 0.69 0.397439
Target:  5'- -aGGGCCGCggCGaguaauuuGCGGUuagaacaggUCgCGCCCUCg -3'
miRNA:   3'- agCCCGGCGa-GU--------UGCCG---------AG-GCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.