miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 3' -55.9 NC_001847.1 + 12448 1.06 0.003547
Target:  5'- uGUAGUCCCAAGCUUCCACGUGGCCGUu -3'
miRNA:   3'- -CAUCAGGGUUCGAAGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 130526 0.76 0.352034
Target:  5'- cGUGGUCCCAGagcGCUgcgaCgACGUGGCCGc -3'
miRNA:   3'- -CAUCAGGGUU---CGAa---GgUGCACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 78731 0.71 0.595376
Target:  5'- -cAGUCCCAGGCUaccgUCACGU-GCUGUg -3'
miRNA:   3'- caUCAGGGUUCGAa---GGUGCAcCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 72118 0.71 0.616116
Target:  5'- cGUGGUCCCGGcCUUCgCGCGcGGCgCGUg -3'
miRNA:   3'- -CAUCAGGGUUcGAAG-GUGCaCCG-GCA- -5'
6502 3' -55.9 NC_001847.1 + 93794 0.7 0.6473
Target:  5'- cUGGUUCCGcGCggCCGCGcGGCCGa -3'
miRNA:   3'- cAUCAGGGUuCGaaGGUGCaCCGGCa -5'
6502 3' -55.9 NC_001847.1 + 130272 0.7 0.657681
Target:  5'- ------aUggGCUUCCGCGUGGCUGUg -3'
miRNA:   3'- caucaggGuuCGAAGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 25801 0.7 0.657681
Target:  5'- -cGGcCUCGAGCUgcuccgCCGCGUcGGCCGg -3'
miRNA:   3'- caUCaGGGUUCGAa-----GGUGCA-CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 11584 0.69 0.719205
Target:  5'- -cGGUgCCGguuGCUUCUGCGcUGGCCGg -3'
miRNA:   3'- caUCAgGGUu--CGAAGGUGC-ACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 65078 0.69 0.739199
Target:  5'- -cAGUCCCAGcGCUUCgGCGgcgaucgagaaGGCCGc -3'
miRNA:   3'- caUCAGGGUU-CGAAGgUGCa----------CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 69567 0.69 0.739199
Target:  5'- --uGUgCCUggGgggCCACGUGGCCGUg -3'
miRNA:   3'- cauCA-GGGuuCgaaGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 55743 0.69 0.749056
Target:  5'- gGUGGUCC--GGCUcgcgcCCGCGcGGCCGUg -3'
miRNA:   3'- -CAUCAGGguUCGAa----GGUGCaCCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 49530 0.68 0.758807
Target:  5'- -gGGcUCCCcuGCUUCUACGcGGCCa- -3'
miRNA:   3'- caUC-AGGGuuCGAAGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 80909 0.68 0.777952
Target:  5'- cGUGGccgCCCAAGCggCC--GUGGCCGc -3'
miRNA:   3'- -CAUCa--GGGUUCGaaGGugCACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 46094 0.68 0.777952
Target:  5'- -cAGgcgCCCGGcccGCUUCCGCGggGGCUGg -3'
miRNA:   3'- caUCa--GGGUU---CGAAGGUGCa-CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 52104 0.68 0.787328
Target:  5'- -cGG-CCCAAGCgcacuagcggCCGCG-GGCCGg -3'
miRNA:   3'- caUCaGGGUUCGaa--------GGUGCaCCGGCa -5'
6502 3' -55.9 NC_001847.1 + 112111 0.67 0.805637
Target:  5'- cUGG-CUCGAGCgg-CGCGUGGCCGc -3'
miRNA:   3'- cAUCaGGGUUCGaagGUGCACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 105891 0.67 0.805637
Target:  5'- cGUAGUCCguGcGCggCCGCGgGGCCa- -3'
miRNA:   3'- -CAUCAGGguU-CGaaGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 111062 0.67 0.814553
Target:  5'- cGUGGUCCuCucGCUgCCGCG-GGCCu- -3'
miRNA:   3'- -CAUCAGG-GuuCGAaGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 59143 0.67 0.814553
Target:  5'- gGUGGUCCCAguuguaccGGCg-CCGCuUGGCCa- -3'
miRNA:   3'- -CAUCAGGGU--------UCGaaGGUGcACCGGca -5'
6502 3' -55.9 NC_001847.1 + 32273 0.67 0.823298
Target:  5'- cGUGG-CUCGcGCcgUCCGCGUGGCgCGg -3'
miRNA:   3'- -CAUCaGGGUuCGa-AGGUGCACCG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.