miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 3' -55.9 NC_001847.1 + 11584 0.69 0.719205
Target:  5'- -cGGUgCCGguuGCUUCUGCGcUGGCCGg -3'
miRNA:   3'- caUCAgGGUu--CGAAGGUGC-ACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 12448 1.06 0.003547
Target:  5'- uGUAGUCCCAAGCUUCCACGUGGCCGUu -3'
miRNA:   3'- -CAUCAGGGUUCGAAGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 17244 0.66 0.893045
Target:  5'- --cGUgCCGAGCcUCCACGggguaGCCGUu -3'
miRNA:   3'- cauCAgGGUUCGaAGGUGCac---CGGCA- -5'
6502 3' -55.9 NC_001847.1 + 25801 0.7 0.657681
Target:  5'- -cGGcCUCGAGCUgcuccgCCGCGUcGGCCGg -3'
miRNA:   3'- caUCaGGGUUCGAa-----GGUGCA-CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 32273 0.67 0.823298
Target:  5'- cGUGG-CUCGcGCcgUCCGCGUGGCgCGg -3'
miRNA:   3'- -CAUCaGGGUuCGa-AGGUGCACCG-GCa -5'
6502 3' -55.9 NC_001847.1 + 39828 0.67 0.831863
Target:  5'- -gGG-CCCGAGCgcuUCCuGCGUGGCgCGc -3'
miRNA:   3'- caUCaGGGUUCGa--AGG-UGCACCG-GCa -5'
6502 3' -55.9 NC_001847.1 + 46094 0.68 0.777952
Target:  5'- -cAGgcgCCCGGcccGCUUCCGCGggGGCUGg -3'
miRNA:   3'- caUCa--GGGUU---CGAAGGUGCa-CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 47943 0.66 0.879064
Target:  5'- cGUuGUCCagcaaaAAGCgcgucgucacgUCCACGUGGCCc- -3'
miRNA:   3'- -CAuCAGGg-----UUCGa----------AGGUGCACCGGca -5'
6502 3' -55.9 NC_001847.1 + 48021 0.66 0.856404
Target:  5'- gGUAGccCCCGAGCcg-CGCGcUGGCCGa -3'
miRNA:   3'- -CAUCa-GGGUUCGaagGUGC-ACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 49530 0.68 0.758807
Target:  5'- -gGGcUCCCcuGCUUCUACGcGGCCa- -3'
miRNA:   3'- caUC-AGGGuuCGAAGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 52104 0.68 0.787328
Target:  5'- -cGG-CCCAAGCgcacuagcggCCGCG-GGCCGg -3'
miRNA:   3'- caUCaGGGUUCGaa--------GGUGCaCCGGCa -5'
6502 3' -55.9 NC_001847.1 + 55743 0.69 0.749056
Target:  5'- gGUGGUCC--GGCUcgcgcCCGCGcGGCCGUg -3'
miRNA:   3'- -CAUCAGGguUCGAa----GGUGCaCCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 56870 0.66 0.893045
Target:  5'- -cGG-CCCGGGCgcggCCACG-GGCCc- -3'
miRNA:   3'- caUCaGGGUUCGaa--GGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 59143 0.67 0.814553
Target:  5'- gGUGGUCCCAguuguaccGGCg-CCGCuUGGCCa- -3'
miRNA:   3'- -CAUCAGGGU--------UCGaaGGUGcACCGGca -5'
6502 3' -55.9 NC_001847.1 + 59200 0.66 0.864175
Target:  5'- cGUAG-CCCGAGCcgUCCGC---GCCGUg -3'
miRNA:   3'- -CAUCaGGGUUCGa-AGGUGcacCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 65078 0.69 0.739199
Target:  5'- -cAGUCCCAGcGCUUCgGCGgcgaucgagaaGGCCGc -3'
miRNA:   3'- caUCAGGGUU-CGAAGgUGCa----------CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 69567 0.69 0.739199
Target:  5'- --uGUgCCUggGgggCCACGUGGCCGUg -3'
miRNA:   3'- cauCA-GGGuuCgaaGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 70894 0.66 0.88617
Target:  5'- aUAGUCCCcuaGGGC--CCGcCGUGGCCu- -3'
miRNA:   3'- cAUCAGGG---UUCGaaGGU-GCACCGGca -5'
6502 3' -55.9 NC_001847.1 + 72118 0.71 0.616116
Target:  5'- cGUGGUCCCGGcCUUCgCGCGcGGCgCGUg -3'
miRNA:   3'- -CAUCAGGGUUcGAAG-GUGCaCCG-GCA- -5'
6502 3' -55.9 NC_001847.1 + 78731 0.71 0.595376
Target:  5'- -cAGUCCCAGGCUaccgUCACGU-GCUGUg -3'
miRNA:   3'- caUCAGGGUUCGAa---GGUGCAcCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.