miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 3' -55.9 NC_001847.1 + 80909 0.68 0.777952
Target:  5'- cGUGGccgCCCAAGCggCC--GUGGCCGc -3'
miRNA:   3'- -CAUCa--GGGUUCGaaGGugCACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 83023 0.66 0.892368
Target:  5'- -gAGgCCCAGcacuaccGCgggCCGCGUGGCCa- -3'
miRNA:   3'- caUCaGGGUU-------CGaa-GGUGCACCGGca -5'
6502 3' -55.9 NC_001847.1 + 84361 0.66 0.87834
Target:  5'- aUGGUCCCGaagacgccgagcgGGC-UCCGCGuUGGCgCGc -3'
miRNA:   3'- cAUCAGGGU-------------UCGaAGGUGC-ACCG-GCa -5'
6502 3' -55.9 NC_001847.1 + 84684 0.67 0.840241
Target:  5'- --uGUCgCGcGGCgcUCACGUGGCCGUa -3'
miRNA:   3'- cauCAGgGU-UCGaaGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 89261 0.67 0.831863
Target:  5'- -aGGUCCUcGGCUUUCugG-GGCCc- -3'
miRNA:   3'- caUCAGGGuUCGAAGGugCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 93794 0.7 0.6473
Target:  5'- cUGGUUCCGcGCggCCGCGcGGCCGa -3'
miRNA:   3'- cAUCAGGGUuCGaaGGUGCaCCGGCa -5'
6502 3' -55.9 NC_001847.1 + 101067 0.66 0.893045
Target:  5'- -cGGcCCCgGGGCcgCCGCGggGGCCGg -3'
miRNA:   3'- caUCaGGG-UUCGaaGGUGCa-CCGGCa -5'
6502 3' -55.9 NC_001847.1 + 101947 0.66 0.893045
Target:  5'- cGUAGUCCgucauggccgCGAGCU--CGCG-GGCCGUc -3'
miRNA:   3'- -CAUCAGG----------GUUCGAagGUGCaCCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 105891 0.67 0.805637
Target:  5'- cGUAGUCCguGcGCggCCGCGgGGCCa- -3'
miRNA:   3'- -CAUCAGGguU-CGaaGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 108526 0.66 0.87173
Target:  5'- -gAGggCUUucGCgcCCACGUGGCCGUc -3'
miRNA:   3'- caUCa-GGGuuCGaaGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 111062 0.67 0.814553
Target:  5'- cGUGGUCCuCucGCUgCCGCG-GGCCu- -3'
miRNA:   3'- -CAUCAGG-GuuCGAaGGUGCaCCGGca -5'
6502 3' -55.9 NC_001847.1 + 112111 0.67 0.805637
Target:  5'- cUGG-CUCGAGCgg-CGCGUGGCCGc -3'
miRNA:   3'- cAUCaGGGUUCGaagGUGCACCGGCa -5'
6502 3' -55.9 NC_001847.1 + 130272 0.7 0.657681
Target:  5'- ------aUggGCUUCCGCGUGGCUGUg -3'
miRNA:   3'- caucaggGuuCGAAGGUGCACCGGCA- -5'
6502 3' -55.9 NC_001847.1 + 130526 0.76 0.352034
Target:  5'- cGUGGUCCCAGagcGCUgcgaCgACGUGGCCGc -3'
miRNA:   3'- -CAUCAGGGUU---CGAa---GgUGCACCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.