Results 41 - 60 of 511 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 66191 | 0.66 | 0.985684 |
Target: 5'- cGCGCu-GGACGccu-GgCUGGAGGCg -3' miRNA: 3'- -CGUGuuUCUGCauuuCgGGCCUCCGg -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 86172 | 0.66 | 0.977304 |
Target: 5'- cGCGCGGAGcuACGUGAugacgggcgcGGCcuaCCGGcGGCUg -3' miRNA: 3'- -CGUGUUUC--UGCAUU----------UCG---GGCCuCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 74642 | 0.66 | 0.976555 |
Target: 5'- cGCGC-GAGGCGgggcagcugcugcGCCUGGAgccGGCCg -3' miRNA: 3'- -CGUGuUUCUGCauuu---------CGGGCCU---CCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 133142 | 0.66 | 0.979901 |
Target: 5'- uGCGCGuGGugGUGcucuacgacccgcuGCCCggGGAGGCg -3' miRNA: 3'- -CGUGUuUCugCAUuu------------CGGG--CCUCCGg -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 132398 | 0.66 | 0.981855 |
Target: 5'- gGCGCcgccGCGcc-GGgCCGGGGGCCg -3' miRNA: 3'- -CGUGuuucUGCauuUCgGGCCUCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 79841 | 0.66 | 0.985684 |
Target: 5'- -gGCGAccgcGGCGUcugaGAAGUCCGGcguguugaAGGCCa -3' miRNA: 3'- cgUGUUu---CUGCA----UUUCGGGCC--------UCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 106709 | 0.66 | 0.983855 |
Target: 5'- gGCGCcgcGGCGUAGccAGCgCGGGcGCCg -3' miRNA: 3'- -CGUGuuuCUGCAUU--UCGgGCCUcCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 34818 | 0.66 | 0.983855 |
Target: 5'- gGCGCGGcAGGCcgaccGGGCgCUGGAGGCg -3' miRNA: 3'- -CGUGUU-UCUGcau--UUCG-GGCCUCCGg -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 54564 | 0.66 | 0.985684 |
Target: 5'- gGCGCgGAGGACGac-GGCCCcGcGGGCUg -3' miRNA: 3'- -CGUG-UUUCUGCauuUCGGG-CcUCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 125235 | 0.66 | 0.979674 |
Target: 5'- cCGCGGGGGCGg--GGCCCGaGAccacgcGGUCg -3' miRNA: 3'- cGUGUUUCUGCauuUCGGGC-CU------CCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 70529 | 0.66 | 0.98735 |
Target: 5'- uGCugGgcGGCGUGcuggcgcuGGCCgacuCGGAGGCg -3' miRNA: 3'- -CGugUuuCUGCAUu-------UCGG----GCCUCCGg -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 92262 | 0.66 | 0.977304 |
Target: 5'- cGCGCucuuGGCGcGGAGCuuGucGGCCa -3' miRNA: 3'- -CGUGuuu-CUGCaUUUCGggCcuCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 131778 | 0.66 | 0.978036 |
Target: 5'- -uGCAGAGccugcggcgcGCGUAcgcccccauggccuaCCCGGAGGCCg -3' miRNA: 3'- cgUGUUUC----------UGCAUuuc------------GGGCCUCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 54439 | 0.66 | 0.979674 |
Target: 5'- cGgGCAGAGACGaGgggggcggggacGAGCCCgaggaGGAGGgCg -3' miRNA: 3'- -CgUGUUUCUGCaU------------UUCGGG-----CCUCCgG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 46687 | 0.66 | 0.981855 |
Target: 5'- aGCACcaugacgggGucGACGUGaAAGCCCGacucGGGGUCc -3' miRNA: 3'- -CGUG---------UuuCUGCAU-UUCGGGC----CUCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 122523 | 0.66 | 0.983274 |
Target: 5'- uGUACGAGca-GUGccGCCCGGAcccugccggucgcuGGCCg -3' miRNA: 3'- -CGUGUUUcugCAUuuCGGGCCU--------------CCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 30294 | 0.66 | 0.981855 |
Target: 5'- aGCGCugcAGGAgUGUGAAGCUgCGGAcGCCc -3' miRNA: 3'- -CGUGu--UUCU-GCAUUUCGG-GCCUcCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 43127 | 0.66 | 0.977304 |
Target: 5'- cCGCAGAcGGCGc-GGGCCCGcGGGCg -3' miRNA: 3'- cGUGUUU-CUGCauUUCGGGCcUCCGg -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 56056 | 0.66 | 0.979674 |
Target: 5'- cCugGGAGGCGccgcUGAAGCCUGcGcGGCUg -3' miRNA: 3'- cGugUUUCUGC----AUUUCGGGC-CuCCGG- -5' |
|||||||
6502 | 5' | -51.8 | NC_001847.1 | + | 98719 | 0.66 | 0.983855 |
Target: 5'- gGC-CGAAGcCGgggccGAAGCCgGGgccgGGGCCg -3' miRNA: 3'- -CGuGUUUCuGCa----UUUCGGgCC----UCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home