miRNA display CGI


Results 21 - 40 of 511 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 112554 0.66 0.983855
Target:  5'- aCGCGAccGGGCGggcccuGcCCCGGGGcGCCc -3'
miRNA:   3'- cGUGUU--UCUGCauuu--C-GGGCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 56056 0.66 0.979674
Target:  5'- cCugGGAGGCGccgcUGAAGCCUGcGcGGCUg -3'
miRNA:   3'- cGugUUUCUGC----AUUUCGGGC-CuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 50452 0.66 0.981855
Target:  5'- uGCgACAAGGACGgcAAGCCgcugccgcagacCGGcgccgguccGGCCg -3'
miRNA:   3'- -CG-UGUUUCUGCauUUCGG------------GCCu--------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 54439 0.66 0.979674
Target:  5'- cGgGCAGAGACGaGgggggcggggacGAGCCCgaggaGGAGGgCg -3'
miRNA:   3'- -CgUGUUUCUGCaU------------UUCGGG-----CCUCCgG- -5'
6502 5' -51.8 NC_001847.1 + 102951 0.66 0.981855
Target:  5'- cCGCGGgccucGGGCccc-GGCCgGGGGGCCg -3'
miRNA:   3'- cGUGUU-----UCUGcauuUCGGgCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 124928 0.66 0.979674
Target:  5'- gGCgACAGcGGGCGcgcccuGGGCCCGGcGGCg -3'
miRNA:   3'- -CG-UGUU-UCUGCau----UUCGGGCCuCCGg -5'
6502 5' -51.8 NC_001847.1 + 19644 0.66 0.983855
Target:  5'- gGCGCGcGGcCGcuugcGGGCCCGGccGCCg -3'
miRNA:   3'- -CGUGUuUCuGCau---UUCGGGCCucCGG- -5'
6502 5' -51.8 NC_001847.1 + 57680 0.66 0.981855
Target:  5'- gGCAC--GGugGUGcuGGGCgCCGcGGGuGCCg -3'
miRNA:   3'- -CGUGuuUCugCAU--UUCG-GGC-CUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 55262 0.66 0.977304
Target:  5'- cGUGCGGAccgaacGGCGccGGGCCCGGAcgGGCg -3'
miRNA:   3'- -CGUGUUU------CUGCauUUCGGGCCU--CCGg -5'
6502 5' -51.8 NC_001847.1 + 5773 0.66 0.981855
Target:  5'- aCGCGAAGcgcgGCGUcuAGCCCcG-GGCCc -3'
miRNA:   3'- cGUGUUUC----UGCAuuUCGGGcCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 46687 0.66 0.981855
Target:  5'- aGCACcaugacgggGucGACGUGaAAGCCCGacucGGGGUCc -3'
miRNA:   3'- -CGUG---------UuuCUGCAU-UUCGGGC----CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 98719 0.66 0.983855
Target:  5'- gGC-CGAAGcCGgggccGAAGCCgGGgccgGGGCCg -3'
miRNA:   3'- -CGuGUUUCuGCa----UUUCGGgCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 27847 0.66 0.983855
Target:  5'- -aGCGGAGAcccCGUGcGGGCCCuGuGGGCCg -3'
miRNA:   3'- cgUGUUUCU---GCAU-UUCGGGcC-UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 116679 0.66 0.977304
Target:  5'- cGCAC--GGACGUGugGAGCgCGGGcGUCg -3'
miRNA:   3'- -CGUGuuUCUGCAU--UUCGgGCCUcCGG- -5'
6502 5' -51.8 NC_001847.1 + 122523 0.66 0.983274
Target:  5'- uGUACGAGca-GUGccGCCCGGAcccugccggucgcuGGCCg -3'
miRNA:   3'- -CGUGUUUcugCAUuuCGGGCCU--------------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 86172 0.66 0.977304
Target:  5'- cGCGCGGAGcuACGUGAugacgggcgcGGCcuaCCGGcGGCUg -3'
miRNA:   3'- -CGUGUUUC--UGCAUU----------UCG---GGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 132398 0.66 0.981855
Target:  5'- gGCGCcgccGCGcc-GGgCCGGGGGCCg -3'
miRNA:   3'- -CGUGuuucUGCauuUCgGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 54116 0.66 0.983855
Target:  5'- cGCGCgGGAGGCGc--AGCaCCGGcugcaaguGGCCg -3'
miRNA:   3'- -CGUG-UUUCUGCauuUCG-GGCCu-------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 78432 0.66 0.983855
Target:  5'- cGCGCGcuGACGgagGAGCUgGGcuGCCu -3'
miRNA:   3'- -CGUGUuuCUGCau-UUCGGgCCucCGG- -5'
6502 5' -51.8 NC_001847.1 + 49893 0.66 0.979674
Target:  5'- uGCACGGc-ACGUGcuGGGCCCGGccGCg -3'
miRNA:   3'- -CGUGUUucUGCAU--UUCGGGCCucCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.