miRNA display CGI


Results 21 - 40 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 5672 0.68 0.958682
Target:  5'- gGCGCGAAGGUGggccGgCCGG-GGCCg -3'
miRNA:   3'- -CGUGUUUCUGCauuuCgGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 5773 0.66 0.981855
Target:  5'- aCGCGAAGcgcgGCGUcuAGCCCcG-GGCCc -3'
miRNA:   3'- cGUGUUUC----UGCAuuUCGGGcCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 6093 0.76 0.593721
Target:  5'- uCGCGGAGGCGcgAGAcGCCCGcGAGGCg -3'
miRNA:   3'- cGUGUUUCUGCa-UUU-CGGGC-CUCCGg -5'
6502 5' -51.8 NC_001847.1 + 6654 0.67 0.965775
Target:  5'- uGCuCGugguGGAUGUAGAGCgaGGcuAGGCCg -3'
miRNA:   3'- -CGuGUu---UCUGCAUUUCGggCC--UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 6942 0.72 0.82509
Target:  5'- aCACGAAGACGggccAGGCgCGG-GGUCg -3'
miRNA:   3'- cGUGUUUCUGCau--UUCGgGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 7742 0.75 0.646468
Target:  5'- gGCGCGGAGGCGgcGgccagggcaAGCCCGacGGCCg -3'
miRNA:   3'- -CGUGUUUCUGCauU---------UCGGGCcuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 7858 0.66 0.985684
Target:  5'- aGCGCGAucGAUGUAucGGgCCGuuuGGGCCg -3'
miRNA:   3'- -CGUGUUu-CUGCAUu-UCgGGCc--UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 8117 0.67 0.96898
Target:  5'- aGCGC--AGGCGcGGGGCCCcaGGGGCg -3'
miRNA:   3'- -CGUGuuUCUGCaUUUCGGGc-CUCCGg -5'
6502 5' -51.8 NC_001847.1 + 8151 0.69 0.91463
Target:  5'- uGCGCGAGGGCuaGUugggaAGGGCUCGcggucguuGAGGCCg -3'
miRNA:   3'- -CGUGUUUCUG--CA-----UUUCGGGC--------CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 8289 0.67 0.96898
Target:  5'- -gACAAAG-CGgcAGGgcucCCCGGgGGGCCa -3'
miRNA:   3'- cgUGUUUCuGCauUUC----GGGCC-UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 8456 0.71 0.866369
Target:  5'- gGguCGGAGGCGgcGccGGgCCGGGGGCg -3'
miRNA:   3'- -CguGUUUCUGCauU--UCgGGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 8601 0.68 0.946252
Target:  5'- cGC-CAGGGGCGgcgcucGgCCGGGGGCg -3'
miRNA:   3'- -CGuGUUUCUGCauuu--CgGGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 8745 0.68 0.945799
Target:  5'- -gGCAAAGGCaagGUAAGcgcauccGCCCcGGGGCCg -3'
miRNA:   3'- cgUGUUUCUG---CAUUU-------CGGGcCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 9741 0.66 0.983855
Target:  5'- aCGCGAccGGGCGggcccuGcCCCGGGGcGCCc -3'
miRNA:   3'- cGUGUU--UCUGCauuu--C-GGGCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 10100 0.7 0.90009
Target:  5'- aGCACAAGcGGCGgggAAAGCCgccuucgcggcgagCGGGcccGGCCg -3'
miRNA:   3'- -CGUGUUU-CUGCa--UUUCGG--------------GCCU---CCGG- -5'
6502 5' -51.8 NC_001847.1 + 10136 0.67 0.969898
Target:  5'- uGCugGGAGGCGcugcugcagcucucGCCCGaGcAGGCCg -3'
miRNA:   3'- -CGugUUUCUGCauuu----------CGGGC-C-UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 10517 0.72 0.82509
Target:  5'- gGCgACGAcGACGUGuucuuccccGGGCCCGGGgacccgcgcccGGCCg -3'
miRNA:   3'- -CG-UGUUuCUGCAU---------UUCGGGCCU-----------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 10697 0.67 0.971965
Target:  5'- cGCGCccGGGCGc--GGCCCGcgccGGCCa -3'
miRNA:   3'- -CGUGuuUCUGCauuUCGGGCcu--CCGG- -5'
6502 5' -51.8 NC_001847.1 + 11299 0.82 0.316543
Target:  5'- cGCGCGAAGAUGggcgcGCCCGccGAGGCCg -3'
miRNA:   3'- -CGUGUUUCUGCauuu-CGGGC--CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 12060 0.77 0.521309
Target:  5'- cGCGCugcGGACGccGAGGCCgCGGAGcGCCg -3'
miRNA:   3'- -CGUGuu-UCUGCa-UUUCGG-GCCUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.