miRNA display CGI


Results 1 - 20 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 138 0.66 0.981855
Target:  5'- cCGCGGgccucGGGCccc-GGCCgGGGGGCCg -3'
miRNA:   3'- cGUGUU-----UCUGcauuUCGGgCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 261 0.85 0.21917
Target:  5'- cGCcCAGGGGCcc-GAGCCCGGGGGCCg -3'
miRNA:   3'- -CGuGUUUCUGcauUUCGGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 399 0.7 0.908471
Target:  5'- cGCGCuccgaccGAGACcgAGGGCCCGG-GGCg -3'
miRNA:   3'- -CGUGu------UUCUGcaUUUCGGGCCuCCGg -5'
6502 5' -51.8 NC_001847.1 + 876 0.71 0.873979
Target:  5'- cGCGCGgcGGCGgcccGCgCCGG-GGCCg -3'
miRNA:   3'- -CGUGUuuCUGCauuuCG-GGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 949 0.67 0.974737
Target:  5'- cGCGCccGGGGACGacu-GCgCCGGcacccGGGCCg -3'
miRNA:   3'- -CGUG--UUUCUGCauuuCG-GGCC-----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 1537 0.76 0.625344
Target:  5'- cGCGCGAAGGCGcccGGGCcgaagacgcgCCGcGAGGCCa -3'
miRNA:   3'- -CGUGUUUCUGCau-UUCG----------GGC-CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 1747 0.67 0.962345
Target:  5'- cGCGCGcAGAgGUAcuccaccgcGCCgCGGAaGGCCa -3'
miRNA:   3'- -CGUGUuUCUgCAUuu-------CGG-GCCU-CCGG- -5'
6502 5' -51.8 NC_001847.1 + 1904 0.66 0.98735
Target:  5'- cCGCGAGcGCGUGcgaGAGCCCgccgcggcgcGGcGGCCa -3'
miRNA:   3'- cGUGUUUcUGCAU---UUCGGG----------CCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 2070 0.68 0.954782
Target:  5'- cGCAgCGGuGGCGgcGAGCgccCCGcGGGGCCc -3'
miRNA:   3'- -CGU-GUUuCUGCauUUCG---GGC-CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 2244 0.66 0.98735
Target:  5'- gGCGCGGgcguGugGUAGucCCCGGGcGGCa -3'
miRNA:   3'- -CGUGUUu---CugCAUUucGGGCCU-CCGg -5'
6502 5' -51.8 NC_001847.1 + 3080 0.67 0.974737
Target:  5'- aGCGCGuccGGCGcgcAGGCCgCGGccggcAGGCCg -3'
miRNA:   3'- -CGUGUuu-CUGCau-UUCGG-GCC-----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 3389 0.77 0.561327
Target:  5'- cGCGCAAAGcccuccgcaagcaGCGggagAGcAGCCCGGGGGCg -3'
miRNA:   3'- -CGUGUUUC-------------UGCa---UU-UCGGGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 3695 0.67 0.971965
Target:  5'- gGCACGAAcACGgccgcGGGCCCcGcGGCCg -3'
miRNA:   3'- -CGUGUUUcUGCau---UUCGGGcCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 3797 0.67 0.962345
Target:  5'- uGCACGAcGGCGUGccGGCaCGGGgcgucGGCCg -3'
miRNA:   3'- -CGUGUUuCUGCAUu-UCGgGCCU-----CCGG- -5'
6502 5' -51.8 NC_001847.1 + 3847 0.71 0.873979
Target:  5'- cGCGCcgccccAGACGUAGacGGCgCCGG-GGCUg -3'
miRNA:   3'- -CGUGuu----UCUGCAUU--UCG-GGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 3896 0.66 0.983855
Target:  5'- gGCGCcgcGGCGUAGccAGCgCGGGcGCCg -3'
miRNA:   3'- -CGUGuuuCUGCAUU--UCGgGCCUcCGG- -5'
6502 5' -51.8 NC_001847.1 + 3959 0.76 0.604243
Target:  5'- gGCGCcgucuccGGCGgcgAGGGCgCCGGGGGCCg -3'
miRNA:   3'- -CGUGuuu----CUGCa--UUUCG-GGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 3996 0.74 0.732764
Target:  5'- cGCGCGgccccgcGGGGCGccGGGCCCGGcgcccgccucucgcgGGGCCg -3'
miRNA:   3'- -CGUGU-------UUCUGCauUUCGGGCC---------------UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 5008 0.67 0.96898
Target:  5'- aGCGCGgcGGCGgc-GGCgCGGAGGg- -3'
miRNA:   3'- -CGUGUuuCUGCauuUCGgGCCUCCgg -5'
6502 5' -51.8 NC_001847.1 + 5306 0.71 0.842219
Target:  5'- aGCGCGAcGGCG-AGGGuCCUGGcagaAGGCCg -3'
miRNA:   3'- -CGUGUUuCUGCaUUUC-GGGCC----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.