miRNA display CGI


Results 1 - 20 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 135008 0.67 0.962345
Target:  5'- -gGCcGGGGCccGAGGCCCGcgggcGGGGCCg -3'
miRNA:   3'- cgUGuUUCUGcaUUUCGGGC-----CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 134954 0.82 0.324079
Target:  5'- -gGCGGGGGCGggggcgGGGGcCCCGGGGGCCa -3'
miRNA:   3'- cgUGUUUCUGCa-----UUUC-GGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 134910 0.76 0.593721
Target:  5'- gGCGucGGGGCGcGAGGCCCGGgcucGGGCCc -3'
miRNA:   3'- -CGUguUUCUGCaUUUCGGGCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 134850 0.77 0.552007
Target:  5'- gGCGCGGGGACGgcGcccgcgcgGGCUCGGcGGCCc -3'
miRNA:   3'- -CGUGUUUCUGCauU--------UCGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 134782 0.72 0.807214
Target:  5'- cGCGCGgggcgggccccGGGGCGcGAAGCCCGGgagggacgcGGGCg -3'
miRNA:   3'- -CGUGU-----------UUCUGCaUUUCGGGCC---------UCCGg -5'
6502 5' -51.8 NC_001847.1 + 134539 0.67 0.974737
Target:  5'- cGCGCGccGcuGCGgagcGGCCgCGGAgGGCCa -3'
miRNA:   3'- -CGUGUuuC--UGCauu-UCGG-GCCU-CCGG- -5'
6502 5' -51.8 NC_001847.1 + 134010 0.72 0.816241
Target:  5'- cGCGCcGAGGCGccgccgcuGGUgCUGGAGGCCg -3'
miRNA:   3'- -CGUGuUUCUGCauu-----UCG-GGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 133955 0.71 0.873979
Target:  5'- cGCACGGAGcuauaGCGagaUAAGGCgCCGG-GGCUg -3'
miRNA:   3'- -CGUGUUUC-----UGC---AUUUCG-GGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 133808 0.78 0.471741
Target:  5'- cGCGCAGGGcgcgGCGcUGGGGCUCGGGGaGCCg -3'
miRNA:   3'- -CGUGUUUC----UGC-AUUUCGGGCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 133324 0.67 0.974737
Target:  5'- gGCGCGccGGACGUGAGcgcGCUCGGcgcgcaGGGCg -3'
miRNA:   3'- -CGUGUu-UCUGCAUUU---CGGGCC------UCCGg -5'
6502 5' -51.8 NC_001847.1 + 133302 0.72 0.82509
Target:  5'- gGCGCAGAGuGCGUGccGCUguUGGAGGUg -3'
miRNA:   3'- -CGUGUUUC-UGCAUuuCGG--GCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 133198 0.71 0.842219
Target:  5'- -gGCGAGGACGagcgccggcGGCCCGaGuGGCCg -3'
miRNA:   3'- cgUGUUUCUGCauu------UCGGGC-CuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 133142 0.66 0.979901
Target:  5'- uGCGCGuGGugGUGcucuacgacccgcuGCCCggGGAGGCg -3'
miRNA:   3'- -CGUGUuUCugCAUuu------------CGGG--CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 132828 0.68 0.95064
Target:  5'- cGCGCAGcGGGCGUGucGCCaUGGGcaGCCg -3'
miRNA:   3'- -CGUGUU-UCUGCAUuuCGG-GCCUc-CGG- -5'
6502 5' -51.8 NC_001847.1 + 132695 0.68 0.945344
Target:  5'- -gACGGGGACGgcGaggcggcGGCCCugccggccgccgcGGGGGCCc -3'
miRNA:   3'- cgUGUUUCUGCauU-------UCGGG-------------CCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 132546 0.71 0.858534
Target:  5'- gGCGCGgcGGGcucGCGUGcGGCCgCGGcGGCCg -3'
miRNA:   3'- -CGUGU--UUC---UGCAUuUCGG-GCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 132439 0.69 0.936726
Target:  5'- ---gGAGGACaUGAGGgCCGGGGcGCCg -3'
miRNA:   3'- cgugUUUCUGcAUUUCgGGCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 132398 0.66 0.981855
Target:  5'- gGCGCcgccGCGcc-GGgCCGGGGGCCg -3'
miRNA:   3'- -CGUGuuucUGCauuUCgGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 132340 0.74 0.725654
Target:  5'- gGCGCGGcuGGCGgccgcgcucgcGGCCCuGGAGGCCg -3'
miRNA:   3'- -CGUGUUu-CUGCauu--------UCGGG-CCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 132191 0.71 0.866369
Target:  5'- cGCGCcGAGGCGgccgccGCgCUGGAGGCg -3'
miRNA:   3'- -CGUGuUUCUGCauuu--CG-GGCCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.