miRNA display CGI


Results 1 - 20 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 134910 0.76 0.593721
Target:  5'- gGCGucGGGGCGcGAGGCCCGGgcucGGGCCc -3'
miRNA:   3'- -CGUguUUCUGCaUUUCGGGCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 66052 0.77 0.531473
Target:  5'- cGCACGucGGCGgc-GGCgCCGGGGGCg -3'
miRNA:   3'- -CGUGUuuCUGCauuUCG-GGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 40156 0.77 0.541708
Target:  5'- cGCGCAGcuGCGccAAAGCCgCGGGGGCUg -3'
miRNA:   3'- -CGUGUUucUGCa-UUUCGG-GCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 101146 0.77 0.552007
Target:  5'- gGCGCGGGGGC-UGGGGCCgGGgccgGGGCCg -3'
miRNA:   3'- -CGUGUUUCUGcAUUUCGGgCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 134850 0.77 0.552007
Target:  5'- gGCGCGGGGACGgcGcccgcgcgGGCUCGGcGGCCc -3'
miRNA:   3'- -CGUGUUUCUGCauU--------UCGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 50106 0.77 0.552007
Target:  5'- cGCGCcGGGcgGCGUAGAGCgCCGGcuGGCCu -3'
miRNA:   3'- -CGUGuUUC--UGCAUUUCG-GGCCu-CCGG- -5'
6502 5' -51.8 NC_001847.1 + 3389 0.77 0.561327
Target:  5'- cGCGCAAAGcccuccgcaagcaGCGggagAGcAGCCCGGGGGCg -3'
miRNA:   3'- -CGUGUUUC-------------UGCa---UU-UCGGGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 77629 0.76 0.583229
Target:  5'- -gGCGAGGACGgcgcgccGCCCguGGAGGCCu -3'
miRNA:   3'- cgUGUUUCUGCauuu---CGGG--CCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 6093 0.76 0.593721
Target:  5'- uCGCGGAGGCGcgAGAcGCCCGcGAGGCg -3'
miRNA:   3'- cGUGUUUCUGCa-UUU-CGGGC-CUCCGg -5'
6502 5' -51.8 NC_001847.1 + 51442 0.77 0.528416
Target:  5'- cGCGCGAcauGGACGgcGacaucucgaagguaAGCCUGGAGGUCu -3'
miRNA:   3'- -CGUGUU---UCUGCauU--------------UCGGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 12060 0.77 0.521309
Target:  5'- cGCGCugcGGACGccGAGGCCgCGGAGcGCCg -3'
miRNA:   3'- -CGUGuu-UCUGCa-UUUCGG-GCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 87910 0.77 0.521309
Target:  5'- uGCACAGgggcgGGGCGUGGGGCUgGGcgcGGCCg -3'
miRNA:   3'- -CGUGUU-----UCUGCAUUUCGGgCCu--CCGG- -5'
6502 5' -51.8 NC_001847.1 + 103074 0.85 0.21917
Target:  5'- cGCcCAGGGGCcc-GAGCCCGGGGGCCg -3'
miRNA:   3'- -CGuGUUUCUGcauUUCGGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 47550 0.84 0.230506
Target:  5'- aGCACGGcGGGCGcggGGAGCCCGGcGGCCg -3'
miRNA:   3'- -CGUGUU-UCUGCa--UUUCGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 92465 0.84 0.25466
Target:  5'- cCACGucuGAGACGUcaaAGAGCCCGGcGGCCg -3'
miRNA:   3'- cGUGU---UUCUGCA---UUUCGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 11299 0.82 0.316543
Target:  5'- cGCGCGAAGAUGggcgcGCCCGccGAGGCCg -3'
miRNA:   3'- -CGUGUUUCUGCauuu-CGGGC--CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 134954 0.82 0.324079
Target:  5'- -gGCGGGGGCGggggcgGGGGcCCCGGGGGCCa -3'
miRNA:   3'- cgUGUUUCUGCa-----UUUC-GGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 35489 0.81 0.339549
Target:  5'- -gGCAAAGGCGgcGcGCgCGGAGGCCa -3'
miRNA:   3'- cgUGUUUCUGCauUuCGgGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 32822 0.79 0.433864
Target:  5'- cGCGCGAGcGCGcGAGGCCCGcGuGGCCg -3'
miRNA:   3'- -CGUGUUUcUGCaUUUCGGGC-CuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 133808 0.78 0.471741
Target:  5'- cGCGCAGGGcgcgGCGcUGGGGCUCGGGGaGCCg -3'
miRNA:   3'- -CGUGUUUC----UGC-AUUUCGGGCCUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.