miRNA display CGI


Results 1 - 20 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 58630 0.66 0.98735
Target:  5'- cCGCGGGGACGU-AGGCCgCGaacacGGGCUc -3'
miRNA:   3'- cGUGUUUCUGCAuUUCGG-GCc----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 7858 0.66 0.985684
Target:  5'- aGCGCGAucGAUGUAucGGgCCGuuuGGGCCg -3'
miRNA:   3'- -CGUGUUu-CUGCAUu-UCgGGCc--UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 86305 0.66 0.985331
Target:  5'- cGCGCGgccGAGGCGcccccgcgcggcAAGGCCCGGAcauccccgauGGCg -3'
miRNA:   3'- -CGUGU---UUCUGCa-----------UUUCGGGCCU----------CCGg -5'
6502 5' -51.8 NC_001847.1 + 12483 1.16 0.002498
Target:  5'- aGCACAAAGACGUAAAGCCCGGAGGCCg -3'
miRNA:   3'- -CGUGUUUCUGCAUUUCGGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 61980 0.66 0.98735
Target:  5'- gGCGCGGcGGGCaUAAugGGCCCGaagagcggcgcGGGGCCc -3'
miRNA:   3'- -CGUGUU-UCUGcAUU--UCGGGC-----------CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 60957 0.66 0.98735
Target:  5'- uGCAgGAAGGCGcc--GCgCGGcauGGGCCc -3'
miRNA:   3'- -CGUgUUUCUGCauuuCGgGCC---UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 71106 0.66 0.98735
Target:  5'- aGCGCccAGGCGUGAaccgcgggcaAGCCCGucccGCCg -3'
miRNA:   3'- -CGUGuuUCUGCAUU----------UCGGGCcuc-CGG- -5'
6502 5' -51.8 NC_001847.1 + 14569 0.66 0.98735
Target:  5'- cGCGCAGAaa-GUAGAGCCCuGAGuCUa -3'
miRNA:   3'- -CGUGUUUcugCAUUUCGGGcCUCcGG- -5'
6502 5' -51.8 NC_001847.1 + 93227 0.66 0.98719
Target:  5'- aGgGCGAGGGCG-AGGGuucuuCCCGGAgucuuauGGCCc -3'
miRNA:   3'- -CgUGUUUCUGCaUUUC-----GGGCCU-------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 21046 0.66 0.985684
Target:  5'- uGCcCcGAGACccccGGCCCuGAGGCCc -3'
miRNA:   3'- -CGuGuUUCUGcauuUCGGGcCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 96788 0.66 0.985684
Target:  5'- gGCGCuGGGGC-UGAAGCUggguCGGGGGgCg -3'
miRNA:   3'- -CGUGuUUCUGcAUUUCGG----GCCUCCgG- -5'
6502 5' -51.8 NC_001847.1 + 74666 0.66 0.98719
Target:  5'- cGCACAAAGcggcggcgccaugGCGgacgcGCCCgacGGGGGCa -3'
miRNA:   3'- -CGUGUUUC-------------UGCauuu-CGGG---CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 1904 0.66 0.98735
Target:  5'- cCGCGAGcGCGUGcgaGAGCCCgccgcggcgcGGcGGCCa -3'
miRNA:   3'- cGUGUUUcUGCAU---UUCGGG----------CCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 95340 0.66 0.985684
Target:  5'- gGCGCAgGGGGCGc--AGCCaggggaGcGGGGCCa -3'
miRNA:   3'- -CGUGU-UUCUGCauuUCGGg-----C-CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 90628 0.66 0.98735
Target:  5'- uCGCGGAcGGCGgccAGCUCgucagcaggggaGGAGGCCa -3'
miRNA:   3'- cGUGUUU-CUGCauuUCGGG------------CCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 2244 0.66 0.98735
Target:  5'- gGCGCGGgcguGugGUAGucCCCGGGcGGCa -3'
miRNA:   3'- -CGUGUUu---CugCAUUucGGGCCU-CCGg -5'
6502 5' -51.8 NC_001847.1 + 82895 0.66 0.985684
Target:  5'- aGCACGAAGcggcGCGUcuugucAAAGCaCagcaGGGGGCa -3'
miRNA:   3'- -CGUGUUUC----UGCA------UUUCG-Gg---CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 58338 0.66 0.985684
Target:  5'- uGCACAAacugccagcagaGGGCGgccAGGCgCGGGacgucGGCCu -3'
miRNA:   3'- -CGUGUU------------UCUGCau-UUCGgGCCU-----CCGG- -5'
6502 5' -51.8 NC_001847.1 + 76421 0.66 0.98735
Target:  5'- cGC-CGGAGG-----AGCCCGGGguGGCCg -3'
miRNA:   3'- -CGuGUUUCUgcauuUCGGGCCU--CCGG- -5'
6502 5' -51.8 NC_001847.1 + 49593 0.66 0.98735
Target:  5'- gGCGCcuGGGCGcagcgGGAGCUCGGcgcGcGCCa -3'
miRNA:   3'- -CGUGuuUCUGCa----UUUCGGGCCu--C-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.