miRNA display CGI


Results 1 - 20 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 99490 0.66 0.979674
Target:  5'- aGCGCGAuccGCGgaaauuAGCCUGGAGuuugcGCCg -3'
miRNA:   3'- -CGUGUUuc-UGCauu---UCGGGCCUC-----CGG- -5'
6502 5' -51.8 NC_001847.1 + 49893 0.66 0.979674
Target:  5'- uGCACGGc-ACGUGcuGGGCCCGGccGCg -3'
miRNA:   3'- -CGUGUUucUGCAU--UUCGGGCCucCGg -5'
6502 5' -51.8 NC_001847.1 + 5773 0.66 0.981855
Target:  5'- aCGCGAAGcgcgGCGUcuAGCCCcG-GGCCc -3'
miRNA:   3'- cGUGUUUC----UGCAuuUCGGGcCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 86172 0.66 0.977304
Target:  5'- cGCGCGGAGcuACGUGAugacgggcgcGGCcuaCCGGcGGCUg -3'
miRNA:   3'- -CGUGUUUC--UGCAUU----------UCG---GGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 46687 0.66 0.981855
Target:  5'- aGCACcaugacgggGucGACGUGaAAGCCCGacucGGGGUCc -3'
miRNA:   3'- -CGUG---------UuuCUGCAU-UUCGGGC----CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 130239 0.66 0.979674
Target:  5'- gGCGCGGucGGuguCGUucgcagcGGCgCGGGGGCCc -3'
miRNA:   3'- -CGUGUU--UCu--GCAuu-----UCGgGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 92262 0.66 0.977304
Target:  5'- cGCGCucuuGGCGcGGAGCuuGucGGCCa -3'
miRNA:   3'- -CGUGuuu-CUGCaUUUCGggCcuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 51993 0.66 0.979674
Target:  5'- gGCGCAucgcGGACGcgcccGAcGCCgCGGcGGCCg -3'
miRNA:   3'- -CGUGUu---UCUGCa----UUuCGG-GCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 56056 0.66 0.979674
Target:  5'- cCugGGAGGCGccgcUGAAGCCUGcGcGGCUg -3'
miRNA:   3'- cGugUUUCUGC----AUUUCGGGC-CuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 124928 0.66 0.979674
Target:  5'- gGCgACAGcGGGCGcgcccuGGGCCCGGcGGCg -3'
miRNA:   3'- -CG-UGUU-UCUGCau----UUCGGGCCuCCGg -5'
6502 5' -51.8 NC_001847.1 + 74642 0.66 0.976555
Target:  5'- cGCGC-GAGGCGgggcagcugcugcGCCUGGAgccGGCCg -3'
miRNA:   3'- -CGUGuUUCUGCauuu---------CGGGCCU---CCGG- -5'
6502 5' -51.8 NC_001847.1 + 131778 0.66 0.978036
Target:  5'- -uGCAGAGccugcggcgcGCGUAcgcccccauggccuaCCCGGAGGCCg -3'
miRNA:   3'- cgUGUUUC----------UGCAUuuc------------GGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 133142 0.66 0.979901
Target:  5'- uGCGCGuGGugGUGcucuacgacccgcuGCCCggGGAGGCg -3'
miRNA:   3'- -CGUGUuUCugCAUuu------------CGGG--CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 125235 0.66 0.979674
Target:  5'- cCGCGGGGGCGg--GGCCCGaGAccacgcGGUCg -3'
miRNA:   3'- cGUGUUUCUGCauuUCGGGC-CU------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 116679 0.66 0.977304
Target:  5'- cGCAC--GGACGUGugGAGCgCGGGcGUCg -3'
miRNA:   3'- -CGUGuuUCUGCAU--UUCGgGCCUcCGG- -5'
6502 5' -51.8 NC_001847.1 + 54439 0.66 0.979674
Target:  5'- cGgGCAGAGACGaGgggggcggggacGAGCCCgaggaGGAGGgCg -3'
miRNA:   3'- -CgUGUUUCUGCaU------------UUCGGG-----CCUCCgG- -5'
6502 5' -51.8 NC_001847.1 + 80377 0.66 0.979674
Target:  5'- cCACGccuGGGACGaccgucuggUGgcGCuuGGGGGCCg -3'
miRNA:   3'- cGUGU---UUCUGC---------AUuuCGggCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 55262 0.66 0.977304
Target:  5'- cGUGCGGAccgaacGGCGccGGGCCCGGAcgGGCg -3'
miRNA:   3'- -CGUGUUU------CUGCauUUCGGGCCU--CCGg -5'
6502 5' -51.8 NC_001847.1 + 43127 0.66 0.977304
Target:  5'- cCGCAGAcGGCGc-GGGCCCGcGGGCg -3'
miRNA:   3'- cGUGUUU-CUGCauUUCGGGCcUCCGg -5'
6502 5' -51.8 NC_001847.1 + 30294 0.66 0.981855
Target:  5'- aGCGCugcAGGAgUGUGAAGCUgCGGAcGCCc -3'
miRNA:   3'- -CGUGu--UUCU-GCAUUUCGG-GCCUcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.