miRNA display CGI


Results 21 - 40 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 134850 0.77 0.552007
Target:  5'- gGCGCGGGGACGgcGcccgcgcgGGCUCGGcGGCCc -3'
miRNA:   3'- -CGUGUUUCUGCauU--------UCGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 101146 0.77 0.552007
Target:  5'- gGCGCGGGGGC-UGGGGCCgGGgccgGGGCCg -3'
miRNA:   3'- -CGUGUUUCUGcAUUUCGGgCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 50106 0.77 0.552007
Target:  5'- cGCGCcGGGcgGCGUAGAGCgCCGGcuGGCCu -3'
miRNA:   3'- -CGUGuUUC--UGCAUUUCG-GGCCu-CCGG- -5'
6502 5' -51.8 NC_001847.1 + 3389 0.77 0.561327
Target:  5'- cGCGCAAAGcccuccgcaagcaGCGggagAGcAGCCCGGGGGCg -3'
miRNA:   3'- -CGUGUUUC-------------UGCa---UU-UCGGGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 38933 0.77 0.572774
Target:  5'- -aGCGucGuCGUcccGGGCCCGGGGGCCg -3'
miRNA:   3'- cgUGUuuCuGCAu--UUCGGGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 115028 0.77 0.572774
Target:  5'- cGCGCcauGAGGGCGgcGAGUCCGG-GGCa -3'
miRNA:   3'- -CGUG---UUUCUGCauUUCGGGCCuCCGg -5'
6502 5' -51.8 NC_001847.1 + 103568 0.76 0.583229
Target:  5'- cGCGCAGAGcuagguacGCGUAGagGGCCCucGGGGGCa -3'
miRNA:   3'- -CGUGUUUC--------UGCAUU--UCGGG--CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 77629 0.76 0.583229
Target:  5'- -gGCGAGGACGgcgcgccGCCCguGGAGGCCu -3'
miRNA:   3'- cgUGUUUCUGCauuu---CGGG--CCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 106442 0.76 0.583229
Target:  5'- cGCACAAAGGgGU----CCCGGuAGGCCa -3'
miRNA:   3'- -CGUGUUUCUgCAuuucGGGCC-UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 37639 0.76 0.59057
Target:  5'- uGCACAAAGACGUcgucuuuuuccggcGcgcAAGCCCGcGGGCUu -3'
miRNA:   3'- -CGUGUUUCUGCA--------------U---UUCGGGCcUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 6093 0.76 0.593721
Target:  5'- uCGCGGAGGCGcgAGAcGCCCGcGAGGCg -3'
miRNA:   3'- cGUGUUUCUGCa-UUU-CGGGC-CUCCGg -5'
6502 5' -51.8 NC_001847.1 + 32097 0.76 0.593721
Target:  5'- gGCGucGGGGCGcGAGGCCCGGgcucGGGCCc -3'
miRNA:   3'- -CGUguUUCUGCaUUUCGGGCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 118006 0.76 0.593721
Target:  5'- uGCuCGAGGACG--AAGCCgGGAGcGCCa -3'
miRNA:   3'- -CGuGUUUCUGCauUUCGGgCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 134910 0.76 0.593721
Target:  5'- gGCGucGGGGCGcGAGGCCCGGgcucGGGCCc -3'
miRNA:   3'- -CGUguUUCUGCaUUUCGGGCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 85915 0.76 0.593721
Target:  5'- cGCGuCGcAGACGUacacGAAGCCCGcGGGCCc -3'
miRNA:   3'- -CGU-GUuUCUGCA----UUUCGGGCcUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 3959 0.76 0.604243
Target:  5'- gGCGCcgucuccGGCGgcgAGGGCgCCGGGGGCCg -3'
miRNA:   3'- -CGUGuuu----CUGCa--UUUCG-GGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 53596 0.76 0.614786
Target:  5'- uGCGCGGGGcCGgcGAGCUCGGccGCCg -3'
miRNA:   3'- -CGUGUUUCuGCauUUCGGGCCucCGG- -5'
6502 5' -51.8 NC_001847.1 + 114906 0.76 0.625344
Target:  5'- cGCGCGGGGGCGagccccUGGGGCaCGGGGGCUc -3'
miRNA:   3'- -CGUGUUUCUGC------AUUUCGgGCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 104350 0.76 0.625344
Target:  5'- cGCGCGAAGGCGcccGGGCcgaagacgcgCCGcGAGGCCa -3'
miRNA:   3'- -CGUGUUUCUGCau-UUCG----------GGC-CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 64227 0.76 0.625344
Target:  5'- cGCGCuAGAGAUGgcggggGAGGCCaCGGcGGGCCc -3'
miRNA:   3'- -CGUG-UUUCUGCa-----UUUCGG-GCC-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.