miRNA display CGI


Results 21 - 40 of 511 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 56278 0.66 0.986866
Target:  5'- uGCGCGAGGGCGcgcaccgcGAGCacaccagcuacucgCCGGAGcGCUu -3'
miRNA:   3'- -CGUGUUUCUGCau------UUCG--------------GGCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 96788 0.66 0.985684
Target:  5'- gGCGCuGGGGC-UGAAGCUggguCGGGGGgCg -3'
miRNA:   3'- -CGUGuUUCUGcAUUUCGG----GCCUCCgG- -5'
6502 5' -51.8 NC_001847.1 + 52996 0.66 0.985684
Target:  5'- cGCGCAGgcauGGCG--GAGCCgacagCGGcGGCCg -3'
miRNA:   3'- -CGUGUUu---CUGCauUUCGG-----GCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 21046 0.66 0.985684
Target:  5'- uGCcCcGAGACccccGGCCCuGAGGCCc -3'
miRNA:   3'- -CGuGuUUCUGcauuUCGGGcCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 79841 0.66 0.985684
Target:  5'- -gGCGAccgcGGCGUcugaGAAGUCCGGcguguugaAGGCCa -3'
miRNA:   3'- cgUGUUu---CUGCA----UUUCGGGCC--------UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 7858 0.66 0.985684
Target:  5'- aGCGCGAucGAUGUAucGGgCCGuuuGGGCCg -3'
miRNA:   3'- -CGUGUUu-CUGCAUu-UCgGGCc--UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 95340 0.66 0.985684
Target:  5'- gGCGCAgGGGGCGc--AGCCaggggaGcGGGGCCa -3'
miRNA:   3'- -CGUGU-UUCUGCauuUCGGg-----C-CUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 58338 0.66 0.985684
Target:  5'- uGCACAAacugccagcagaGGGCGgccAGGCgCGGGacgucGGCCu -3'
miRNA:   3'- -CGUGUU------------UCUGCau-UUCGgGCCU-----CCGG- -5'
6502 5' -51.8 NC_001847.1 + 123709 0.66 0.985684
Target:  5'- gGCGCGGGGucgcACGgcAgcacuucgcucGGCgaCGGGGGCCg -3'
miRNA:   3'- -CGUGUUUC----UGCauU-----------UCGg-GCCUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 72378 0.66 0.985684
Target:  5'- aGCGCAccucGGugGUGgugguggacgcGGGCCCcgacgcggGGAcGGCCa -3'
miRNA:   3'- -CGUGUu---UCugCAU-----------UUCGGG--------CCU-CCGG- -5'
6502 5' -51.8 NC_001847.1 + 82895 0.66 0.985684
Target:  5'- aGCACGAAGcggcGCGUcuugucAAAGCaCagcaGGGGGCa -3'
miRNA:   3'- -CGUGUUUC----UGCA------UUUCG-Gg---CCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 110671 0.66 0.985684
Target:  5'- aGCGCGAucGAUGUAucGGgCCGuuuGGGCCg -3'
miRNA:   3'- -CGUGUUu-CUGCAUu-UCgGGCc--UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 45129 0.66 0.985684
Target:  5'- aGCGCGAcAGACGccgAggugccggcgguGAGCgCGGGGGaCCu -3'
miRNA:   3'- -CGUGUU-UCUGCa--U------------UUCGgGCCUCC-GG- -5'
6502 5' -51.8 NC_001847.1 + 56413 0.66 0.985684
Target:  5'- aGCACGu-GACGgu-AGCCUGGgacuGGGUg -3'
miRNA:   3'- -CGUGUuuCUGCauuUCGGGCC----UCCGg -5'
6502 5' -51.8 NC_001847.1 + 66191 0.66 0.985684
Target:  5'- cGCGCu-GGACGccu-GgCUGGAGGCg -3'
miRNA:   3'- -CGUGuuUCUGCauuuCgGGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 54564 0.66 0.985684
Target:  5'- gGCGCgGAGGACGac-GGCCCcGcGGGCUg -3'
miRNA:   3'- -CGUG-UUUCUGCauuUCGGG-CcUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 86305 0.66 0.985331
Target:  5'- cGCGCGgccGAGGCGcccccgcgcggcAAGGCCCGGAcauccccgauGGCg -3'
miRNA:   3'- -CGUGU---UUCUGCa-----------UUUCGGGCCU----------CCGg -5'
6502 5' -51.8 NC_001847.1 + 17533 0.66 0.985331
Target:  5'- cCGCGGAuGCGggucucagAGAGCCCGGcgcagacguuuuGGCCg -3'
miRNA:   3'- cGUGUUUcUGCa-------UUUCGGGCCu-----------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 20065 0.66 0.98479
Target:  5'- uGCGgGAGcGGCGUGGcggcucccgcggcgcGGCCCGGccaucgcuagcccguGGCCg -3'
miRNA:   3'- -CGUgUUU-CUGCAUU---------------UCGGGCCu--------------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 123044 0.66 0.984607
Target:  5'- cGCugGAAGuACGgccgcGGGCgCCGGAcccgcggcgcuccgcGGCCu -3'
miRNA:   3'- -CGugUUUC-UGCau---UUCG-GGCCU---------------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.