miRNA display CGI


Results 41 - 60 of 511 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6502 5' -51.8 NC_001847.1 + 105874 0.66 0.983855
Target:  5'- cGCGCGAAucgccgccACGUAGuccgugcgcGGCCgCGG-GGCCa -3'
miRNA:   3'- -CGUGUUUc-------UGCAUU---------UCGG-GCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 34818 0.66 0.983855
Target:  5'- gGCGCGGcAGGCcgaccGGGCgCUGGAGGCg -3'
miRNA:   3'- -CGUGUU-UCUGcau--UUCG-GGCCUCCGg -5'
6502 5' -51.8 NC_001847.1 + 27847 0.66 0.983855
Target:  5'- -aGCGGAGAcccCGUGcGGGCCCuGuGGGCCg -3'
miRNA:   3'- cgUGUUUCU---GCAU-UUCGGGcC-UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 19644 0.66 0.983855
Target:  5'- gGCGCGcGGcCGcuugcGGGCCCGGccGCCg -3'
miRNA:   3'- -CGUGUuUCuGCau---UUCGGGCCucCGG- -5'
6502 5' -51.8 NC_001847.1 + 112554 0.66 0.983855
Target:  5'- aCGCGAccGGGCGggcccuGcCCCGGGGcGCCc -3'
miRNA:   3'- cGUGUU--UCUGCauuu--C-GGGCCUC-CGG- -5'
6502 5' -51.8 NC_001847.1 + 131305 0.66 0.983855
Target:  5'- uGCugAcgccuucuggcGAGGCGU--GGCCCGGcAGcgcGCCg -3'
miRNA:   3'- -CGugU-----------UUCUGCAuuUCGGGCC-UC---CGG- -5'
6502 5' -51.8 NC_001847.1 + 98649 0.66 0.983855
Target:  5'- gGCGCGuuuGGGCc-GAAGCCgGGgccgaagccgGGGCCg -3'
miRNA:   3'- -CGUGUu--UCUGcaUUUCGGgCC----------UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 106709 0.66 0.983855
Target:  5'- gGCGCcgcGGCGUAGccAGCgCGGGcGCCg -3'
miRNA:   3'- -CGUGuuuCUGCAUU--UCGgGCCUcCGG- -5'
6502 5' -51.8 NC_001847.1 + 97466 0.66 0.983855
Target:  5'- cGCGCcAGGGCcgcgcgcuAAGCCCGcGGGCUu -3'
miRNA:   3'- -CGUGuUUCUGcau-----UUCGGGCcUCCGG- -5'
6502 5' -51.8 NC_001847.1 + 71323 0.66 0.983855
Target:  5'- gGCcCGcGGACGUGGAGCugCCaG-GGCCa -3'
miRNA:   3'- -CGuGUuUCUGCAUUUCG--GGcCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 98719 0.66 0.983855
Target:  5'- gGC-CGAAGcCGgggccGAAGCCgGGgccgGGGCCg -3'
miRNA:   3'- -CGuGUUUCuGCa----UUUCGGgCC----UCCGG- -5'
6502 5' -51.8 NC_001847.1 + 118476 0.66 0.983855
Target:  5'- gGCGCAAggcccGGGCGcgccuguAGGCgCGG-GGCCc -3'
miRNA:   3'- -CGUGUU-----UCUGCau-----UUCGgGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 78261 0.66 0.983855
Target:  5'- cGC-CGucGcCGgcGGGCCCGuuGGCCg -3'
miRNA:   3'- -CGuGUuuCuGCauUUCGGGCcuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 104433 0.66 0.983855
Target:  5'- cGCGC--GGGCGUccaGGAGCgCCGGGcuGCCc -3'
miRNA:   3'- -CGUGuuUCUGCA---UUUCG-GGCCUc-CGG- -5'
6502 5' -51.8 NC_001847.1 + 108070 0.66 0.983855
Target:  5'- -aGCGuGGGCGcggUGccGCCCGGGGGgCu -3'
miRNA:   3'- cgUGUuUCUGC---AUuuCGGGCCUCCgG- -5'
6502 5' -51.8 NC_001847.1 + 101152 0.66 0.983855
Target:  5'- cCGCGAAGGCu--GGGCCCaGcccGGCCa -3'
miRNA:   3'- cGUGUUUCUGcauUUCGGGcCu--CCGG- -5'
6502 5' -51.8 NC_001847.1 + 78432 0.66 0.983855
Target:  5'- cGCGCGcuGACGgagGAGCUgGGcuGCCu -3'
miRNA:   3'- -CGUGUuuCUGCau-UUCGGgCCucCGG- -5'
6502 5' -51.8 NC_001847.1 + 54116 0.66 0.983855
Target:  5'- cGCGCgGGAGGCGc--AGCaCCGGcugcaaguGGCCg -3'
miRNA:   3'- -CGUG-UUUCUGCauuUCG-GGCCu-------CCGG- -5'
6502 5' -51.8 NC_001847.1 + 44334 0.66 0.983855
Target:  5'- cCGCc-GGGCGUGAuuaacgcgcGCCCGG-GGCUg -3'
miRNA:   3'- cGUGuuUCUGCAUUu--------CGGGCCuCCGG- -5'
6502 5' -51.8 NC_001847.1 + 66496 0.66 0.983855
Target:  5'- gGCGgGGAGGCgGUGAAGUuuGGGcuggagcugcgcGGCUg -3'
miRNA:   3'- -CGUgUUUCUG-CAUUUCGggCCU------------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.