miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 122127 0.66 0.792653
Target:  5'- uGCAGGUCgCGAcGGCCGGcgcGCAGGg-- -3'
miRNA:   3'- -CGUCCGGgGCU-CCGGUUa--CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 8762 0.66 0.801739
Target:  5'- cGCAuccGCCCCGGGGCCGggGCc----- -3'
miRNA:   3'- -CGUc--CGGGGCUCCGGUuaCGuucagu -5'
6503 3' -57.2 NC_001847.1 + 120073 0.66 0.801739
Target:  5'- cGCAGGCgaucCCCG-GGCC---GCcGGUCAg -3'
miRNA:   3'- -CGUCCG----GGGCuCCGGuuaCGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 77388 0.66 0.809783
Target:  5'- aGCA-GCCCCGuGGCCAGcGCGccgaacgGGUUc -3'
miRNA:   3'- -CGUcCGGGGCuCCGGUUaCGU-------UCAGu -5'
6503 3' -57.2 NC_001847.1 + 83038 0.66 0.810669
Target:  5'- cGCGGGCCgCGuGGCCAugacCGAGcgCAc -3'
miRNA:   3'- -CGUCCGGgGCuCCGGUuac-GUUCa-GU- -5'
6503 3' -57.2 NC_001847.1 + 47401 0.66 0.792653
Target:  5'- cGCcGGCUCCguGAGGCCGuggGCGGcGUCu -3'
miRNA:   3'- -CGuCCGGGG--CUCCGGUua-CGUU-CAGu -5'
6503 3' -57.2 NC_001847.1 + 15084 0.66 0.810669
Target:  5'- gGCAGGagCCGGGGCUAGgaGCAaagggggcGGUCGg -3'
miRNA:   3'- -CGUCCggGGCUCCGGUUa-CGU--------UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 61759 0.66 0.810669
Target:  5'- uGCgAGGCCCaCGGguuaacgguGGCgCGGUGCGGGUgGg -3'
miRNA:   3'- -CG-UCCGGG-GCU---------CCG-GUUACGUUCAgU- -5'
6503 3' -57.2 NC_001847.1 + 12712 0.66 0.801739
Target:  5'- gGCAGGCCggugccUCGGGGUggaaGAUGCAcGUCu -3'
miRNA:   3'- -CGUCCGG------GGCUCCGg---UUACGUuCAGu -5'
6503 3' -57.2 NC_001847.1 + 52929 0.66 0.810669
Target:  5'- -gGGGCgCCCGcgaAGGCCG-UGCcGGUUAa -3'
miRNA:   3'- cgUCCG-GGGC---UCCGGUuACGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 73247 0.66 0.801739
Target:  5'- cGCGGGCgcgCUCGAGGCC-GUGCGcG-CAc -3'
miRNA:   3'- -CGUCCG---GGGCUCCGGuUACGUuCaGU- -5'
6503 3' -57.2 NC_001847.1 + 31929 0.66 0.801739
Target:  5'- cCGGGCCCCGGucucGGUCGGaGCGcGGUCc -3'
miRNA:   3'- cGUCCGGGGCU----CCGGUUaCGU-UCAGu -5'
6503 3' -57.2 NC_001847.1 + 114079 0.67 0.764545
Target:  5'- uCGGGCCCCGccccaGGGCCucaggGCcggGGGUCu -3'
miRNA:   3'- cGUCCGGGGC-----UCCGGuua--CG---UUCAGu -5'
6503 3' -57.2 NC_001847.1 + 130628 0.67 0.76836
Target:  5'- -aGGGCgCCGAGGCCGAagacgcggagaucgGCGAGg-- -3'
miRNA:   3'- cgUCCGgGGCUCCGGUUa-------------CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 86050 0.67 0.764545
Target:  5'- gGCgAGGCgCUgGGGGCCAcggAUGCGAG-CGu -3'
miRNA:   3'- -CG-UCCG-GGgCUCCGGU---UACGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 72235 0.67 0.763588
Target:  5'- cGCGGGCCCCGAGcacccgcGCCAcccgcUGCAc---- -3'
miRNA:   3'- -CGUCCGGGGCUC-------CGGUu----ACGUucagu -5'
6503 3' -57.2 NC_001847.1 + 119686 0.67 0.764545
Target:  5'- cCAGGaCCCGaAGGCgAcgGCGagAGUCAg -3'
miRNA:   3'- cGUCCgGGGC-UCCGgUuaCGU--UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 13974 0.67 0.783419
Target:  5'- aGCccGCCCCu-GGCCGGcaagcgGCGGGUCAu -3'
miRNA:   3'- -CGucCGGGGcuCCGGUUa-----CGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 27210 0.67 0.745192
Target:  5'- aCGGGCgCgCCGGGGCgcuCGAgcUGCGGGUCGc -3'
miRNA:   3'- cGUCCG-G-GGCUCCG---GUU--ACGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 132939 0.67 0.764545
Target:  5'- gGCGGccuacugccGCCCCGAGGUCGcgGCGcGGcUCGc -3'
miRNA:   3'- -CGUC---------CGGGGCUCCGGUuaCGU-UC-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.