miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 126388 0.73 0.444998
Target:  5'- --cGGCCCCGGGGCgGAUGCGc---- -3'
miRNA:   3'- cguCCGGGGCUCCGgUUACGUucagu -5'
6503 3' -57.2 NC_001847.1 + 30606 0.72 0.472992
Target:  5'- aGC-GGCCCCGGGGCCGccGCGcAG-CGc -3'
miRNA:   3'- -CGuCCGGGGCUCCGGUuaCGU-UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 43597 0.72 0.492138
Target:  5'- aGCGuGGCgCUGGGGCCGGUGCugGcCAc -3'
miRNA:   3'- -CGU-CCGgGGCUCCGGUUACGuuCaGU- -5'
6503 3' -57.2 NC_001847.1 + 96751 0.72 0.492138
Target:  5'- aGCAGGCUCCGccgaagccGGuGCCAGUGCcGGUg- -3'
miRNA:   3'- -CGUCCGGGGC--------UC-CGGUUACGuUCAgu -5'
6503 3' -57.2 NC_001847.1 + 123480 0.71 0.521501
Target:  5'- cGCGGGCUcggCUGGGGCCGccGCAAG-CGg -3'
miRNA:   3'- -CGUCCGG---GGCUCCGGUuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 41833 0.71 0.531441
Target:  5'- cGCGGGUCCCaGGGCUGggGCAcGUCc -3'
miRNA:   3'- -CGUCCGGGGcUCCGGUuaCGUuCAGu -5'
6503 3' -57.2 NC_001847.1 + 93059 0.71 0.54145
Target:  5'- uGCcGGCaCCgCGAGGCCGAUGCGccgCAg -3'
miRNA:   3'- -CGuCCG-GG-GCUCCGGUUACGUucaGU- -5'
6503 3' -57.2 NC_001847.1 + 63105 0.71 0.550511
Target:  5'- gGUAcGCCCCGGGGCCGccGCcgcgcacGGGUCGg -3'
miRNA:   3'- -CGUcCGGGGCUCCGGUuaCG-------UUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 76400 0.7 0.5923
Target:  5'- -gGGGCgCCgGGGGCCGcgGCGGGggCAc -3'
miRNA:   3'- cgUCCG-GGgCUCCGGUuaCGUUCa-GU- -5'
6503 3' -57.2 NC_001847.1 + 32155 0.7 0.5923
Target:  5'- cGgGGGCCCCGGGGgCCAAgacGCAGa--- -3'
miRNA:   3'- -CgUCCGGGGCUCC-GGUUa--CGUUcagu -5'
6503 3' -57.2 NC_001847.1 + 2110 0.7 0.5923
Target:  5'- gGCGGGCCgCGAucucGGCCAGcGCcucgGGGUCGa -3'
miRNA:   3'- -CGUCCGGgGCU----CCGGUUaCG----UUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 125204 0.7 0.5923
Target:  5'- -aAGGCgCCCG-GGCCGcgGCGAG-CGu -3'
miRNA:   3'- cgUCCG-GGGCuCCGGUuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 134968 0.7 0.5923
Target:  5'- cGgGGGCCCCGGGGgCCAAgacGCAGa--- -3'
miRNA:   3'- -CgUCCGGGGCUCC-GGUUa--CGUUcagu -5'
6503 3' -57.2 NC_001847.1 + 104923 0.7 0.5923
Target:  5'- gGCGGGCCgCGAucucGGCCAGcGCcucgGGGUCGa -3'
miRNA:   3'- -CGUCCGGgGCU----CCGGUUaCG----UUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 82466 0.7 0.5923
Target:  5'- gGCGGGCCCggccccggccaCGGGGCCGccgaaggcGUAGGUCGc -3'
miRNA:   3'- -CGUCCGGG-----------GCUCCGGUua------CGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 22391 0.7 0.5923
Target:  5'- -aAGGCgCCCG-GGCCGcgGCGAG-CGu -3'
miRNA:   3'- cgUCCG-GGGCuCCGGUuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 80727 0.7 0.5923
Target:  5'- cCGGGCCgCCGAGGCCAAccGCGGc--- -3'
miRNA:   3'- cGUCCGG-GGCUCCGGUUa-CGUUcagu -5'
6503 3' -57.2 NC_001847.1 + 21060 0.7 0.602587
Target:  5'- --cGGCCCUGAGGCCcugggGCGGGg-- -3'
miRNA:   3'- cguCCGGGGCUCCGGuua--CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 123873 0.7 0.602587
Target:  5'- --cGGCCCUGAGGCCcugggGCGGGg-- -3'
miRNA:   3'- cguCCGGGGCUCCGGuua--CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 43003 0.7 0.612896
Target:  5'- gGCGGGCCCCGcggacGGCgGAauugggGCAcgaAGUCAu -3'
miRNA:   3'- -CGUCCGGGGCu----CCGgUUa-----CGU---UCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.