miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 11365 1.11 0.001291
Target:  5'- cGCAGGCCCCGAGGCCAAUGCAAGUCAg -3'
miRNA:   3'- -CGUCCGGGGCUCCGGUUACGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 90850 0.81 0.134623
Target:  5'- aGCGGcGCCCCGGGGCCGggGCugguGUCGa -3'
miRNA:   3'- -CGUC-CGGGGCUCCGGUuaCGuu--CAGU- -5'
6503 3' -57.2 NC_001847.1 + 101064 0.79 0.188038
Target:  5'- gGCcGGCCCCGGGGCCGccGCGGGg-- -3'
miRNA:   3'- -CGuCCGGGGCUCCGGUuaCGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 34082 0.78 0.229544
Target:  5'- cGCGgcGGCCCCGGGGCCGGccucgGCGGGUg- -3'
miRNA:   3'- -CGU--CCGGGGCUCCGGUUa----CGUUCAgu -5'
6503 3' -57.2 NC_001847.1 + 51061 0.76 0.292009
Target:  5'- aGCAGGCCaCCGAGGCguucGUGCGcgggcuGGUCGa -3'
miRNA:   3'- -CGUCCGG-GGCUCCGgu--UACGU------UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 8877 0.75 0.327922
Target:  5'- -uGGGCCCCaGAGcGCCA--GCGAGUCGg -3'
miRNA:   3'- cgUCCGGGG-CUC-CGGUuaCGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 50920 0.74 0.350206
Target:  5'- cGCGgcGGCCCCGgccgucaGGGCC--UGCAGGUCGu -3'
miRNA:   3'- -CGU--CCGGGGC-------UCCGGuuACGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 87358 0.74 0.367002
Target:  5'- cGCGGGCgCCGAGGCCGAcGCGu---- -3'
miRNA:   3'- -CGUCCGgGGCUCCGGUUaCGUucagu -5'
6503 3' -57.2 NC_001847.1 + 3709 0.74 0.383506
Target:  5'- cGCGGGCCCCGcGGCCGccGCGuAG-CGc -3'
miRNA:   3'- -CGUCCGGGGCuCCGGUuaCGU-UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 106522 0.74 0.383506
Target:  5'- cGCGGGCCCCGcGGCCGccGCGuAG-CGc -3'
miRNA:   3'- -CGUCCGGGGCuCCGGUuaCGU-UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 104542 0.74 0.383506
Target:  5'- cGCGgcGGCCCCGGGGCCGcuacGCGgcGGUCc -3'
miRNA:   3'- -CGU--CCGGGGCUCCGGUua--CGU--UCAGu -5'
6503 3' -57.2 NC_001847.1 + 84219 0.74 0.383506
Target:  5'- uGCAGGCCCUGAcGGCCGGggccgccGCGGGg-- -3'
miRNA:   3'- -CGUCCGGGGCU-CCGGUUa------CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 31976 0.73 0.400496
Target:  5'- gGCGGGCCCCGGGGCgCGAaGCccggGAGg-- -3'
miRNA:   3'- -CGUCCGGGGCUCCG-GUUaCG----UUCagu -5'
6503 3' -57.2 NC_001847.1 + 134789 0.73 0.400496
Target:  5'- gGCGGGCCCCGGGGCgCGAaGCccggGAGg-- -3'
miRNA:   3'- -CGUCCGGGGCUCCG-GUUaCG----UUCagu -5'
6503 3' -57.2 NC_001847.1 + 67087 0.73 0.406554
Target:  5'- cGCAGGCgcgCCgCGAGGCCGccgugucgagcuuuGUGCAGGUg- -3'
miRNA:   3'- -CGUCCG---GG-GCUCCGGU--------------UACGUUCAgu -5'
6503 3' -57.2 NC_001847.1 + 72403 0.73 0.426861
Target:  5'- cGCGGGCCCCGAcgcggggacGGCCAcgGCcg--CAa -3'
miRNA:   3'- -CGUCCGGGGCU---------CCGGUuaCGuucaGU- -5'
6503 3' -57.2 NC_001847.1 + 58815 0.73 0.426861
Target:  5'- cGCcGGCgCCUG-GGCCGGUGCGagGGUCGg -3'
miRNA:   3'- -CGuCCG-GGGCuCCGGUUACGU--UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 26864 0.73 0.435875
Target:  5'- cCAGGCaCCCGAGuGCCuGAUGCGGGa-- -3'
miRNA:   3'- cGUCCG-GGGCUC-CGG-UUACGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 75134 0.73 0.435875
Target:  5'- cCGGGCCCCGccgGGGCCGgcgGUGCucucGGUUAg -3'
miRNA:   3'- cGUCCGGGGC---UCCGGU---UACGu---UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 126388 0.73 0.444998
Target:  5'- --cGGCCCCGGGGCgGAUGCGc---- -3'
miRNA:   3'- cguCCGGGGCUCCGgUUACGUucagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.