Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6503 | 3' | -57.2 | NC_001847.1 | + | 135010 | 0.7 | 0.612896 |
Target: 5'- cCGGGgCCCGAGGCCcgcggGCGGGg-- -3' miRNA: 3'- cGUCCgGGGCUCCGGuua--CGUUCagu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 43597 | 0.72 | 0.492138 |
Target: 5'- aGCGuGGCgCUGGGGCCGGUGCugGcCAc -3' miRNA: 3'- -CGU-CCGgGGCUCCGGUUACGuuCaGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 41833 | 0.71 | 0.531441 |
Target: 5'- cGCGGGUCCCaGGGCUGggGCAcGUCc -3' miRNA: 3'- -CGUCCGGGGcUCCGGUuaCGUuCAGu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 93059 | 0.71 | 0.54145 |
Target: 5'- uGCcGGCaCCgCGAGGCCGAUGCGccgCAg -3' miRNA: 3'- -CGuCCG-GG-GCUCCGGUUACGUucaGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 76400 | 0.7 | 0.5923 |
Target: 5'- -gGGGCgCCgGGGGCCGcgGCGGGggCAc -3' miRNA: 3'- cgUCCG-GGgCUCCGGUuaCGUUCa-GU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 125204 | 0.7 | 0.5923 |
Target: 5'- -aAGGCgCCCG-GGCCGcgGCGAG-CGu -3' miRNA: 3'- cgUCCG-GGGCuCCGGUuaCGUUCaGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 134968 | 0.7 | 0.5923 |
Target: 5'- cGgGGGCCCCGGGGgCCAAgacGCAGa--- -3' miRNA: 3'- -CgUCCGGGGCUCC-GGUUa--CGUUcagu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 104923 | 0.7 | 0.5923 |
Target: 5'- gGCGGGCCgCGAucucGGCCAGcGCcucgGGGUCGa -3' miRNA: 3'- -CGUCCGGgGCU----CCGGUUaCG----UUCAGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 123873 | 0.7 | 0.602587 |
Target: 5'- --cGGCCCUGAGGCCcugggGCGGGg-- -3' miRNA: 3'- cguCCGGGGCUCCGGuua--CGUUCagu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 30606 | 0.72 | 0.472992 |
Target: 5'- aGC-GGCCCCGGGGCCGccGCGcAG-CGc -3' miRNA: 3'- -CGuCCGGGGCUCCGGUuaCGU-UCaGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 126388 | 0.73 | 0.444998 |
Target: 5'- --cGGCCCCGGGGCgGAUGCGc---- -3' miRNA: 3'- cguCCGGGGCUCCGgUUACGUucagu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 75134 | 0.73 | 0.435875 |
Target: 5'- cCGGGCCCCGccgGGGCCGgcgGUGCucucGGUUAg -3' miRNA: 3'- cGUCCGGGGC---UCCGGU---UACGu---UCAGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 51061 | 0.76 | 0.292009 |
Target: 5'- aGCAGGCCaCCGAGGCguucGUGCGcgggcuGGUCGa -3' miRNA: 3'- -CGUCCGG-GGCUCCGgu--UACGU------UCAGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 8877 | 0.75 | 0.327922 |
Target: 5'- -uGGGCCCCaGAGcGCCA--GCGAGUCGg -3' miRNA: 3'- cgUCCGGGG-CUC-CGGUuaCGUUCAGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 84219 | 0.74 | 0.383506 |
Target: 5'- uGCAGGCCCUGAcGGCCGGggccgccGCGGGg-- -3' miRNA: 3'- -CGUCCGGGGCU-CCGGUUa------CGUUCagu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 106522 | 0.74 | 0.383506 |
Target: 5'- cGCGGGCCCCGcGGCCGccGCGuAG-CGc -3' miRNA: 3'- -CGUCCGGGGCuCCGGUuaCGU-UCaGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 134789 | 0.73 | 0.400496 |
Target: 5'- gGCGGGCCCCGGGGCgCGAaGCccggGAGg-- -3' miRNA: 3'- -CGUCCGGGGCUCCG-GUUaCG----UUCagu -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 58815 | 0.73 | 0.426861 |
Target: 5'- cGCcGGCgCCUG-GGCCGGUGCGagGGUCGg -3' miRNA: 3'- -CGuCCG-GGGCuCCGGUUACGU--UCAGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 72403 | 0.73 | 0.426861 |
Target: 5'- cGCGGGCCCCGAcgcggggacGGCCAcgGCcg--CAa -3' miRNA: 3'- -CGUCCGGGGCU---------CCGGUuaCGuucaGU- -5' |
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6503 | 3' | -57.2 | NC_001847.1 | + | 26864 | 0.73 | 0.435875 |
Target: 5'- cCAGGCaCCCGAGuGCCuGAUGCGGGa-- -3' miRNA: 3'- cGUCCG-GGGCUC-CGG-UUACGUUCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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