miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 26506 0.66 0.836435
Target:  5'- gGCGGGCCUgccgggcgCGGGGCCGGggGCGuucGGcCAu -3'
miRNA:   3'- -CGUCCGGG--------GCUCCGGUUa-CGU---UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 73247 0.66 0.801739
Target:  5'- cGCGGGCgcgCUCGAGGCC-GUGCGcG-CAc -3'
miRNA:   3'- -CGUCCG---GGGCUCCGGuUACGUuCaGU- -5'
6503 3' -57.2 NC_001847.1 + 8762 0.66 0.801739
Target:  5'- cGCAuccGCCCCGGGGCCGggGCc----- -3'
miRNA:   3'- -CGUc--CGGGGCUCCGGUuaCGuucagu -5'
6503 3' -57.2 NC_001847.1 + 11365 1.11 0.001291
Target:  5'- cGCAGGCCCCGAGGCCAAUGCAAGUCAg -3'
miRNA:   3'- -CGUCCGGGGCUCCGGUUACGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 39191 0.66 0.828025
Target:  5'- uCAGGCCCUGGGaGCgg--GCGauGGUCAu -3'
miRNA:   3'- cGUCCGGGGCUC-CGguuaCGU--UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 109191 0.66 0.819434
Target:  5'- -aAGGCgUCGGGGCgGGUGCGA-UCGg -3'
miRNA:   3'- cgUCCGgGGCUCCGgUUACGUUcAGU- -5'
6503 3' -57.2 NC_001847.1 + 103497 0.66 0.810669
Target:  5'- cGCGGGCUCCG-GGCCcgccgaaacaaAGUGCAcuAG-CGc -3'
miRNA:   3'- -CGUCCGGGGCuCCGG-----------UUACGU--UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 86510 0.66 0.810669
Target:  5'- gGCGGcGCCCCGccGCCGcgGCGu-UCAc -3'
miRNA:   3'- -CGUC-CGGGGCucCGGUuaCGUucAGU- -5'
6503 3' -57.2 NC_001847.1 + 102835 0.66 0.810669
Target:  5'- aGCGGGUCCCGuu-CCGcgGCGGcGUCGc -3'
miRNA:   3'- -CGUCCGGGGCuccGGUuaCGUU-CAGU- -5'
6503 3' -57.2 NC_001847.1 + 120073 0.66 0.801739
Target:  5'- cGCAGGCgaucCCCG-GGCC---GCcGGUCAg -3'
miRNA:   3'- -CGUCCG----GGGCuCCGGuuaCGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 52929 0.66 0.810669
Target:  5'- -gGGGCgCCCGcgaAGGCCG-UGCcGGUUAa -3'
miRNA:   3'- cgUCCG-GGGC---UCCGGUuACGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 119121 0.66 0.810669
Target:  5'- gGCAGGCa-UGGGGCCGucgaugGCGAGcUCGu -3'
miRNA:   3'- -CGUCCGggGCUCCGGUua----CGUUC-AGU- -5'
6503 3' -57.2 NC_001847.1 + 118802 0.66 0.836435
Target:  5'- cCAGcGCCUCcAGGCCG-UGCcGGUCGu -3'
miRNA:   3'- cGUC-CGGGGcUCCGGUuACGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 15084 0.66 0.810669
Target:  5'- gGCAGGagCCGGGGCUAGgaGCAaagggggcGGUCGg -3'
miRNA:   3'- -CGUCCggGGCUCCGGUUa-CGU--------UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 116657 0.66 0.828025
Target:  5'- cGCGGGCaCgCUGGuGGCCugcGUGUggGUCc -3'
miRNA:   3'- -CGUCCG-G-GGCU-CCGGu--UACGuuCAGu -5'
6503 3' -57.2 NC_001847.1 + 119999 0.66 0.810669
Target:  5'- aGC-GGCCCCGAcGCgCAGUaGCAAGg-- -3'
miRNA:   3'- -CGuCCGGGGCUcCG-GUUA-CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 77388 0.66 0.809783
Target:  5'- aGCA-GCCCCGuGGCCAGcGCGccgaacgGGUUc -3'
miRNA:   3'- -CGUcCGGGGCuCCGGUUaCGU-------UCAGu -5'
6503 3' -57.2 NC_001847.1 + 31929 0.66 0.801739
Target:  5'- cCGGGCCCCGGucucGGUCGGaGCGcGGUCc -3'
miRNA:   3'- cGUCCGGGGCU----CCGGUUaCGU-UCAGu -5'
6503 3' -57.2 NC_001847.1 + 46934 0.66 0.828025
Target:  5'- cCGGGCUCCG-GGCCGcGUGCGgcgaAGcCAa -3'
miRNA:   3'- cGUCCGGGGCuCCGGU-UACGU----UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 83038 0.66 0.810669
Target:  5'- cGCGGGCCgCGuGGCCAugacCGAGcgCAc -3'
miRNA:   3'- -CGUCCGGgGCuCCGGUuac-GUUCa-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.