miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 139 0.67 0.745192
Target:  5'- cGCGGGCCUCGGgccccGGCCGGgggGCcgGGGUUc -3'
miRNA:   3'- -CGUCCGGGGCU-----CCGGUUa--CG--UUCAGu -5'
6503 3' -57.2 NC_001847.1 + 1791 0.67 0.745192
Target:  5'- cGCAGGUCCCGGGGauguacuccUCGAaagGCGcGUCGc -3'
miRNA:   3'- -CGUCCGGGGCUCC---------GGUUa--CGUuCAGU- -5'
6503 3' -57.2 NC_001847.1 + 2110 0.7 0.5923
Target:  5'- gGCGGGCCgCGAucucGGCCAGcGCcucgGGGUCGa -3'
miRNA:   3'- -CGUCCGGgGCU----CCGGUUaCG----UUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 2111 0.69 0.674775
Target:  5'- uUAGGCacucgucggCCGAGGCCAGUGC--GUCu -3'
miRNA:   3'- cGUCCGg--------GGCUCCGGUUACGuuCAGu -5'
6503 3' -57.2 NC_001847.1 + 2976 0.69 0.623219
Target:  5'- cGCAGcGCCgCCGGGGCCGGcGCugGAGcCGc -3'
miRNA:   3'- -CGUC-CGG-GGCUCCGGUUaCG--UUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 3709 0.74 0.383506
Target:  5'- cGCGGGCCCCGcGGCCGccGCGuAG-CGc -3'
miRNA:   3'- -CGUCCGGGGCuCCGGUuaCGU-UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 6472 0.68 0.705351
Target:  5'- cCAGGCaguCCCGcacGGCC--UGCAGGUCGu -3'
miRNA:   3'- cGUCCG---GGGCu--CCGGuuACGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 6745 0.69 0.674775
Target:  5'- aGCGGGCgUCGucugcggugcGGCCGGUGCGAGg-- -3'
miRNA:   3'- -CGUCCGgGGCu---------CCGGUUACGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 8297 0.68 0.685015
Target:  5'- gGCAGGgcuCCCCGggGGGCCAGgcugucgGCAGGaCGa -3'
miRNA:   3'- -CGUCC---GGGGC--UCCGGUUa------CGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 8762 0.66 0.801739
Target:  5'- cGCAuccGCCCCGGGGCCGggGCc----- -3'
miRNA:   3'- -CGUc--CGGGGCUCCGGUuaCGuucagu -5'
6503 3' -57.2 NC_001847.1 + 8877 0.75 0.327922
Target:  5'- -uGGGCCCCaGAGcGCCA--GCGAGUCGg -3'
miRNA:   3'- cgUCCGGGG-CUC-CGGUuaCGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 9978 0.68 0.71543
Target:  5'- -uGGGCCCCGAGGCgc-UGCGccUCGc -3'
miRNA:   3'- cgUCCGGGGCUCCGguuACGUucAGU- -5'
6503 3' -57.2 NC_001847.1 + 11266 0.67 0.764545
Target:  5'- uCGGGCCCCGccccaGGGCCucaggGCcggGGGUCu -3'
miRNA:   3'- cGUCCGGGGC-----UCCGGuua--CG---UUCAGu -5'
6503 3' -57.2 NC_001847.1 + 11365 1.11 0.001291
Target:  5'- cGCAGGCCCCGAGGCCAAUGCAAGUCAg -3'
miRNA:   3'- -CGUCCGGGGCUCCGGUUACGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 12712 0.66 0.801739
Target:  5'- gGCAGGCCggugccUCGGGGUggaaGAUGCAcGUCu -3'
miRNA:   3'- -CGUCCGG------GGCUCCGg---UUACGUuCAGu -5'
6503 3' -57.2 NC_001847.1 + 13974 0.67 0.783419
Target:  5'- aGCccGCCCCu-GGCCGGcaagcgGCGGGUCAu -3'
miRNA:   3'- -CGucCGGGGcuCCGGUUa-----CGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 14401 0.68 0.685015
Target:  5'- aGCuGGCgUCGAGGCCccgcucgcaGCGGGUCGc -3'
miRNA:   3'- -CGuCCGgGGCUCCGGuua------CGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 15084 0.66 0.810669
Target:  5'- gGCAGGagCCGGGGCUAGgaGCAaagggggcGGUCGg -3'
miRNA:   3'- -CGUCCggGGCUCCGGUUa-CGU--------UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 16692 0.66 0.810669
Target:  5'- cGCAGGCa-CGAGGCCGccaccaGCAGGa-- -3'
miRNA:   3'- -CGUCCGggGCUCCGGUua----CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 17273 0.67 0.777811
Target:  5'- cGCAGGCCCaGucGCCGGUGgCGucguccucugucagaGGUCGg -3'
miRNA:   3'- -CGUCCGGGgCucCGGUUAC-GU---------------UCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.