miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 86510 0.66 0.810669
Target:  5'- gGCGGcGCCCCGccGCCGcgGCGu-UCAc -3'
miRNA:   3'- -CGUC-CGGGGCucCGGUuaCGUucAGU- -5'
6503 3' -57.2 NC_001847.1 + 103497 0.66 0.810669
Target:  5'- cGCGGGCUCCG-GGCCcgccgaaacaaAGUGCAcuAG-CGc -3'
miRNA:   3'- -CGUCCGGGGCuCCGG-----------UUACGU--UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 77388 0.66 0.809783
Target:  5'- aGCA-GCCCCGuGGCCAGcGCGccgaacgGGUUc -3'
miRNA:   3'- -CGUcCGGGGCuCCGGUUaCGU-------UCAGu -5'
6503 3' -57.2 NC_001847.1 + 94906 0.66 0.80533
Target:  5'- aCGGGCCagCCGGGGCUGGggguggaaaaauggcUGCAGGcCAa -3'
miRNA:   3'- cGUCCGG--GGCUCCGGUU---------------ACGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 73247 0.66 0.801739
Target:  5'- cGCGGGCgcgCUCGAGGCC-GUGCGcG-CAc -3'
miRNA:   3'- -CGUCCG---GGGCUCCGGuUACGUuCaGU- -5'
6503 3' -57.2 NC_001847.1 + 120073 0.66 0.801739
Target:  5'- cGCAGGCgaucCCCG-GGCC---GCcGGUCAg -3'
miRNA:   3'- -CGUCCG----GGGCuCCGGuuaCGuUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 111575 0.66 0.801739
Target:  5'- cGCAuccGCCCCGGGGCCGggGCc----- -3'
miRNA:   3'- -CGUc--CGGGGCUCCGGUuaCGuucagu -5'
6503 3' -57.2 NC_001847.1 + 31929 0.66 0.801739
Target:  5'- cCGGGCCCCGGucucGGUCGGaGCGcGGUCc -3'
miRNA:   3'- cGUCCGGGGCU----CCGGUUaCGU-UCAGu -5'
6503 3' -57.2 NC_001847.1 + 8762 0.66 0.801739
Target:  5'- cGCAuccGCCCCGGGGCCGggGCc----- -3'
miRNA:   3'- -CGUc--CGGGGCUCCGGUuaCGuucagu -5'
6503 3' -57.2 NC_001847.1 + 12712 0.66 0.801739
Target:  5'- gGCAGGCCggugccUCGGGGUggaaGAUGCAcGUCu -3'
miRNA:   3'- -CGUCCGG------GGCUCCGg---UUACGUuCAGu -5'
6503 3' -57.2 NC_001847.1 + 122127 0.66 0.792653
Target:  5'- uGCAGGUCgCGAcGGCCGGcgcGCAGGg-- -3'
miRNA:   3'- -CGUCCGGgGCU-CCGGUUa--CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 47401 0.66 0.792653
Target:  5'- cGCcGGCUCCguGAGGCCGuggGCGGcGUCu -3'
miRNA:   3'- -CGuCCGGGG--CUCCGGUua-CGUU-CAGu -5'
6503 3' -57.2 NC_001847.1 + 13974 0.67 0.783419
Target:  5'- aGCccGCCCCu-GGCCGGcaagcgGCGGGUCAu -3'
miRNA:   3'- -CGucCGGGGcuCCGGUUa-----CGUUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 60568 0.67 0.783419
Target:  5'- uGCAGGCCCUGc-GUCA--GCAGGUUg -3'
miRNA:   3'- -CGUCCGGGGCucCGGUuaCGUUCAGu -5'
6503 3' -57.2 NC_001847.1 + 17273 0.67 0.777811
Target:  5'- cGCAGGCCCaGucGCCGGUGgCGucguccucugucagaGGUCGg -3'
miRNA:   3'- -CGUCCGGGgCucCGGUUAC-GU---------------UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 60022 0.67 0.774046
Target:  5'- gGCGGGgCCCG-GGCCuucucggGCAAG-CGc -3'
miRNA:   3'- -CGUCCgGGGCuCCGGuua----CGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 54498 0.67 0.774046
Target:  5'- gGC-GGCgCCGGGGCCGggGUggGgggCGg -3'
miRNA:   3'- -CGuCCGgGGCUCCGGUuaCGuuCa--GU- -5'
6503 3' -57.2 NC_001847.1 + 22285 0.67 0.774046
Target:  5'- gGCAGcGCCgCCGAGGCCGAcacGCugauGGg-- -3'
miRNA:   3'- -CGUC-CGG-GGCUCCGGUUa--CGu---UCagu -5'
6503 3' -57.2 NC_001847.1 + 95388 0.67 0.774046
Target:  5'- cGCcGGCUCUGAGGCCGGcGCcGGg-- -3'
miRNA:   3'- -CGuCCGGGGCUCCGGUUaCGuUCagu -5'
6503 3' -57.2 NC_001847.1 + 75384 0.67 0.774046
Target:  5'- gGCAcGGCaCCgGAcgcGGCCA--GCGAGUCGa -3'
miRNA:   3'- -CGU-CCG-GGgCU---CCGGUuaCGUUCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.