miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 123562 0.67 0.774046
Target:  5'- -gGGGCUugggCCGGGGCCGccGCGAG-CGg -3'
miRNA:   3'- cgUCCGG----GGCUCCGGUuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 27815 0.67 0.76836
Target:  5'- -aGGGCgCCGAGGCCGAagacgcggagaucgGCGAGg-- -3'
miRNA:   3'- cgUCCGgGGCUCCGGUUa-------------CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 130628 0.67 0.76836
Target:  5'- -aGGGCgCCGAGGCCGAagacgcggagaucgGCGAGg-- -3'
miRNA:   3'- cgUCCGgGGCUCCGGUUa-------------CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 30126 0.67 0.764545
Target:  5'- gGCGGccuacugccGCCCCGAGGUCGcgGCGcGGcUCGc -3'
miRNA:   3'- -CGUC---------CGGGGCUCCGGUuaCGU-UC-AGU- -5'
6503 3' -57.2 NC_001847.1 + 114079 0.67 0.764545
Target:  5'- uCGGGCCCCGccccaGGGCCucaggGCcggGGGUCu -3'
miRNA:   3'- cGUCCGGGGC-----UCCGGuua--CG---UUCAGu -5'
6503 3' -57.2 NC_001847.1 + 119686 0.67 0.764545
Target:  5'- cCAGGaCCCGaAGGCgAcgGCGagAGUCAg -3'
miRNA:   3'- cGUCCgGGGC-UCCGgUuaCGU--UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 132939 0.67 0.764545
Target:  5'- gGCGGccuacugccGCCCCGAGGUCGcgGCGcGGcUCGc -3'
miRNA:   3'- -CGUC---------CGGGGCUCCGGUuaCGU-UC-AGU- -5'
6503 3' -57.2 NC_001847.1 + 96092 0.67 0.764545
Target:  5'- gGCGGaGCCggagUCGGGGCCGGaGCcgGAGUCGg -3'
miRNA:   3'- -CGUC-CGG----GGCUCCGGUUaCG--UUCAGU- -5'
6503 3' -57.2 NC_001847.1 + 107015 0.67 0.764545
Target:  5'- cCAGGUCCCGAacgccGGCCAugaaaucgGCGGuGUCGc -3'
miRNA:   3'- cGUCCGGGGCU-----CCGGUua------CGUU-CAGU- -5'
6503 3' -57.2 NC_001847.1 + 86050 0.67 0.764545
Target:  5'- gGCgAGGCgCUgGGGGCCAcggAUGCGAG-CGu -3'
miRNA:   3'- -CG-UCCG-GGgCUCCGGU---UACGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 88896 0.67 0.764545
Target:  5'- cGCuGGGCcacaCCCGAGGCacuGGUGCGAGa-- -3'
miRNA:   3'- -CG-UCCG----GGGCUCCGg--UUACGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 11266 0.67 0.764545
Target:  5'- uCGGGCCCCGccccaGGGCCucaggGCcggGGGUCu -3'
miRNA:   3'- cGUCCGGGGC-----UCCGGuua--CG---UUCAGu -5'
6503 3' -57.2 NC_001847.1 + 72235 0.67 0.763588
Target:  5'- cGCGGGCCCCGAGcacccgcGCCAcccgcUGCAc---- -3'
miRNA:   3'- -CGUCCGGGGCUC-------CGGUu----ACGUucagu -5'
6503 3' -57.2 NC_001847.1 + 132361 0.67 0.754924
Target:  5'- cGC-GGCCCUgGAGGCCGccgGCGGGg-- -3'
miRNA:   3'- -CGuCCGGGG-CUCCGGUua-CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 126263 0.67 0.754924
Target:  5'- -gGGGCgUCCGGGGUCGucgGCGAGUUc -3'
miRNA:   3'- cgUCCG-GGGCUCCGGUua-CGUUCAGu -5'
6503 3' -57.2 NC_001847.1 + 62012 0.67 0.754924
Target:  5'- cGCgGGGCCCUGcGGCCGuAUGCGGcUCc -3'
miRNA:   3'- -CG-UCCGGGGCuCCGGU-UACGUUcAGu -5'
6503 3' -57.2 NC_001847.1 + 23450 0.67 0.754924
Target:  5'- -gGGGCgUCCGGGGUCGucgGCGAGUUc -3'
miRNA:   3'- cgUCCG-GGGCUCCGGUua-CGUUCAGu -5'
6503 3' -57.2 NC_001847.1 + 29548 0.67 0.754924
Target:  5'- cGC-GGCCCUgGAGGCCGccgGCGGGg-- -3'
miRNA:   3'- -CGuCCGGGG-CUCCGGUua-CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 29205 0.67 0.753955
Target:  5'- cCGGGCuCCCGGugcucucGGCCGcgGCGGGcCGc -3'
miRNA:   3'- cGUCCG-GGGCU-------CCGGUuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 132018 0.67 0.753955
Target:  5'- cCGGGCuCCCGGugcucucGGCCGcgGCGGGcCGc -3'
miRNA:   3'- cGUCCG-GGGCU-------CCGGUuaCGUUCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.