miRNA display CGI


Results 61 - 80 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 35320 0.66 0.823901
Target:  5'- cGCUGgaagCggGCGuGCGCCuggaGCUGCCGAg- -3'
miRNA:   3'- -CGAUa---GuaCGU-CGCGG----CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 65426 0.66 0.823901
Target:  5'- uGCUccgggagGCGGCaGCCGCgCGCCGcgGa -3'
miRNA:   3'- -CGAuagua--CGUCG-CGGCG-GCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 45634 0.66 0.823901
Target:  5'- gGCgg-CAgcGCGGCGCgCGCUGCCGcaAUGc -3'
miRNA:   3'- -CGauaGUa-CGUCGCG-GCGGCGGC--UAC- -5'
6503 5' -56.9 NC_001847.1 + 31450 0.66 0.823901
Target:  5'- gGCggccCcgGCGcGgGCCGCCGCCGcgcGUGg -3'
miRNA:   3'- -CGaua-GuaCGU-CgCGGCGGCGGC---UAC- -5'
6503 5' -56.9 NC_001847.1 + 54398 0.66 0.823901
Target:  5'- cGCgggCGagGCGGgCGCCGCCGCgGuUGg -3'
miRNA:   3'- -CGauaGUa-CGUC-GCGGCGGCGgCuAC- -5'
6503 5' -56.9 NC_001847.1 + 78587 0.66 0.823044
Target:  5'- --cAUCAcGCGGCcgcgcucccuggaGCUGCCGCCGcgGc -3'
miRNA:   3'- cgaUAGUaCGUCG-------------CGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 33007 0.66 0.815244
Target:  5'- cGCcgugGUCGcGCggAGUGCCGCCGCCc--- -3'
miRNA:   3'- -CGa---UAGUaCG--UCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 8452 0.66 0.815244
Target:  5'- cGCcggGUCGgagGCGGCGCCGg-GCCGggGg -3'
miRNA:   3'- -CGa--UAGUa--CGUCGCGGCggCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 41849 0.66 0.815244
Target:  5'- cGCg--CGcGCGGCcuGCgCGCCGCCGAc- -3'
miRNA:   3'- -CGauaGUaCGUCG--CG-GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 53121 0.66 0.815244
Target:  5'- cGC-GUCGgcCAGCGCCGaCUGCgCGGUGa -3'
miRNA:   3'- -CGaUAGUacGUCGCGGC-GGCG-GCUAC- -5'
6503 5' -56.9 NC_001847.1 + 132673 0.66 0.815244
Target:  5'- gGCgg-CG-GgGGCGCCGCCGCCc--- -3'
miRNA:   3'- -CGauaGUaCgUCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 28335 0.66 0.815244
Target:  5'- cGCUcgCcggcggGCAGCGCgGCCGUCa--- -3'
miRNA:   3'- -CGAuaGua----CGUCGCGgCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 72982 0.66 0.815244
Target:  5'- gGCUA-CAcgGCGGCcuaCGCCGCCGcgGc -3'
miRNA:   3'- -CGAUaGUa-CGUCGcg-GCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 37655 0.66 0.815244
Target:  5'- cGC--UCGUGCGGCaGCCGCCcaGCgaGGUGc -3'
miRNA:   3'- -CGauAGUACGUCG-CGGCGG--CGg-CUAC- -5'
6503 5' -56.9 NC_001847.1 + 81022 0.66 0.815244
Target:  5'- aGCg--CAUG-GGCGaCGCCGCCGcgGa -3'
miRNA:   3'- -CGauaGUACgUCGCgGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 106120 0.66 0.815244
Target:  5'- gGCgagCGcgGCgcgGGCGCCGCUGCCGccGg -3'
miRNA:   3'- -CGauaGUa-CG---UCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 130099 0.66 0.815244
Target:  5'- --cGUCccGuCGGaGCCGCCGCCGGUc -3'
miRNA:   3'- cgaUAGuaC-GUCgCGGCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 111265 0.66 0.815244
Target:  5'- cGCcggGUCGgagGCGGCGCCGg-GCCGggGg -3'
miRNA:   3'- -CGa--UAGUa--CGUCGCGGCggCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 76906 0.66 0.815244
Target:  5'- gGCgGUCGcGCGcCGCCGCUGCCGc-- -3'
miRNA:   3'- -CGaUAGUaCGUcGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 32752 0.66 0.815244
Target:  5'- gGCUAUUuucgcggGCGGCGCUucgcgacggccgGCCGCUGGa- -3'
miRNA:   3'- -CGAUAGua-----CGUCGCGG------------CGGCGGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.