miRNA display CGI


Results 41 - 60 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 120499 0.66 0.832382
Target:  5'- cGCUcgCAgcgaGCGGCGCgCGagCGCCGcgGu -3'
miRNA:   3'- -CGAuaGUa---CGUCGCG-GCg-GCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 133181 0.66 0.832382
Target:  5'- cGCUG----GCGGCGCCGCcCGgCGAg- -3'
miRNA:   3'- -CGAUaguaCGUCGCGGCG-GCgGCUac -5'
6503 5' -56.9 NC_001847.1 + 131949 0.66 0.832382
Target:  5'- aGCUggCGgaccGCuGCGCCGUCGCCu--- -3'
miRNA:   3'- -CGAuaGUa---CGuCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 79683 0.66 0.832382
Target:  5'- gGCUAgcgCG-GCGcGCGCC-CCGCCGGc- -3'
miRNA:   3'- -CGAUa--GUaCGU-CGCGGcGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 30368 0.66 0.832382
Target:  5'- cGCUG----GCGGCGCCGCcCGgCGAg- -3'
miRNA:   3'- -CGAUaguaCGUCGCGGCG-GCgGCUac -5'
6503 5' -56.9 NC_001847.1 + 116161 0.66 0.832382
Target:  5'- cGCUggCGgccGCgGGCGCCGCgGCCGc-- -3'
miRNA:   3'- -CGAuaGUa--CG-UCGCGGCGgCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 29136 0.66 0.832382
Target:  5'- aGCUggCGgaccGCuGCGCCGUCGCCu--- -3'
miRNA:   3'- -CGAuaGUa---CGuCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 100855 0.66 0.832382
Target:  5'- cGCUGaCGgccgcgagcGCGGCGCCcaGCCGCCGc-- -3'
miRNA:   3'- -CGAUaGUa--------CGUCGCGG--CGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 54049 0.66 0.832382
Target:  5'- --cGUCGgcgcGCGGCgagGCCGCCGCCa--- -3'
miRNA:   3'- cgaUAGUa---CGUCG---CGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 116586 0.66 0.832382
Target:  5'- uGCgcUCugggcGCAGCGCUGCCGCUc--- -3'
miRNA:   3'- -CGauAGua---CGUCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 104640 0.66 0.832382
Target:  5'- aCUGUCGUcUAGCGCgCGCCcgagggccgcGCCGAUc -3'
miRNA:   3'- cGAUAGUAcGUCGCG-GCGG----------CGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 72453 0.66 0.832382
Target:  5'- cGCUGgac-GCGGCGCUGCaccacggcgUGCUGAUGa -3'
miRNA:   3'- -CGAUaguaCGUCGCGGCG---------GCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 111222 0.66 0.826465
Target:  5'- aGCaagGUCAcgaugagcggcgagcUGCuGCGCCcgaaccuGCCGCUGAUGc -3'
miRNA:   3'- -CGa--UAGU---------------ACGuCGCGG-------CGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 134263 0.66 0.823901
Target:  5'- gGCggccCcgGCGcGgGCCGCCGCCGcgcGUGg -3'
miRNA:   3'- -CGaua-GuaCGU-CgCGGCGGCGGC---UAC- -5'
6503 5' -56.9 NC_001847.1 + 65426 0.66 0.823901
Target:  5'- uGCUccgggagGCGGCaGCCGCgCGCCGcgGa -3'
miRNA:   3'- -CGAuagua--CGUCG-CGGCG-GCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 6960 0.66 0.823901
Target:  5'- cGCgggGUCGcgGCGGCGCUuCCGcCCGcgGg -3'
miRNA:   3'- -CGa--UAGUa-CGUCGCGGcGGC-GGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 101360 0.66 0.823901
Target:  5'- gGCUG-CAUGCGcGCGCuugCGCCGCgGGn- -3'
miRNA:   3'- -CGAUaGUACGU-CGCG---GCGGCGgCUac -5'
6503 5' -56.9 NC_001847.1 + 48371 0.66 0.823901
Target:  5'- aGC-GUCAcgaccGUGGCGCCGCCggGCCGGg- -3'
miRNA:   3'- -CGaUAGUa----CGUCGCGGCGG--CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 35320 0.66 0.823901
Target:  5'- cGCUGgaagCggGCGuGCGCCuggaGCUGCCGAg- -3'
miRNA:   3'- -CGAUa---GuaCGU-CGCGG----CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 32111 0.66 0.823901
Target:  5'- cGCgg-C-UGCGGCccgcCCGCCGCCGGc- -3'
miRNA:   3'- -CGauaGuACGUCGc---GGCGGCGGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.