miRNA display CGI


Results 41 - 60 of 351 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 105251 0.72 0.478619
Target:  5'- gGCgg-CcgGCAGgGCCGCCGCCu--- -3'
miRNA:   3'- -CGauaGuaCGUCgCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 36360 0.72 0.48818
Target:  5'- cGCgcgCAcGCGGCGCCGCCGCgGc-- -3'
miRNA:   3'- -CGauaGUaCGUCGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 112992 0.72 0.497831
Target:  5'- cGCUGcgCcgGCuuuugcGCGCCGCCGCCGc-- -3'
miRNA:   3'- -CGAUa-GuaCGu-----CGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 10179 0.72 0.497831
Target:  5'- cGCUGcgCcgGCuuuugcGCGCCGCCGCCGc-- -3'
miRNA:   3'- -CGAUa-GuaCGu-----CGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 39837 0.72 0.507566
Target:  5'- cGCUuccugCGUgGCGcGCGCCaGCCGCCGGUa -3'
miRNA:   3'- -CGAua---GUA-CGU-CGCGG-CGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 73787 0.72 0.507566
Target:  5'- cCUcgCcgGUGCGGgGCUGCCuGCCGGUGg -3'
miRNA:   3'- cGAuaG--UACGUCgCGGCGG-CGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 54588 0.72 0.517381
Target:  5'- gGCUGggCGgcgcugGCGGCGCgCGCCcgcGCCGAUGc -3'
miRNA:   3'- -CGAUa-GUa-----CGUCGCG-GCGG---CGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 51501 0.72 0.517381
Target:  5'- ---cUCGgaGCAGCGCCG-CGCCGGUGc -3'
miRNA:   3'- cgauAGUa-CGUCGCGGCgGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 88094 0.72 0.517381
Target:  5'- aGCUGUCGgcgGUGGCGCgGCUgGCCGGa- -3'
miRNA:   3'- -CGAUAGUa--CGUCGCGgCGG-CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 122955 0.72 0.517381
Target:  5'- cGCUAUCGUagucGuCGGCGCugucgcugcuauCGCCGUCGAUGu -3'
miRNA:   3'- -CGAUAGUA----C-GUCGCG------------GCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 80164 0.72 0.526278
Target:  5'- cGCUGUgGuacgcguUGCAguGCGCCGCCGCCu--- -3'
miRNA:   3'- -CGAUAgU-------ACGU--CGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 70214 0.72 0.526278
Target:  5'- uGCUGcgCGUGCuGCuggagaaGgCGCCGCCGAUGu -3'
miRNA:   3'- -CGAUa-GUACGuCG-------CgGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 14787 0.72 0.52727
Target:  5'- aGCUcgacgGUCccguUGUAGCGCCGCCcgGCCGGg- -3'
miRNA:   3'- -CGA-----UAGu---ACGUCGCGGCGG--CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 83825 0.72 0.52727
Target:  5'- aGCagGUCAUGaAGCGCCGCCGCa---- -3'
miRNA:   3'- -CGa-UAGUACgUCGCGGCGGCGgcuac -5'
6503 5' -56.9 NC_001847.1 + 58070 0.72 0.531246
Target:  5'- cGCU-UCGgcgGCgAGCGCCGCCGgaguaccagcagcuuCCGAUGg -3'
miRNA:   3'- -CGAuAGUa--CG-UCGCGGCGGC---------------GGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 119891 0.71 0.53723
Target:  5'- gGCgaucgCGUGCguGGcCGCCGCCGCCGccGg -3'
miRNA:   3'- -CGaua--GUACG--UC-GCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 40181 0.71 0.53723
Target:  5'- gGCUG-CGcGCGGCGgaaCgGCCGCCGAUGc -3'
miRNA:   3'- -CGAUaGUaCGUCGC---GgCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 2563 0.71 0.53723
Target:  5'- gGCUGUCuucgGCGcgggcgccuGCGCgGCCGCCGcgGc -3'
miRNA:   3'- -CGAUAGua--CGU---------CGCGgCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 48648 0.71 0.53723
Target:  5'- cGCgacgGUGCAGCGCCGCugcaagaagccCGCCGAc- -3'
miRNA:   3'- -CGauagUACGUCGCGGCG-----------GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 84115 0.71 0.53723
Target:  5'- gGCggcGUCGUGCAGCcgauGCCGCCGCa---- -3'
miRNA:   3'- -CGa--UAGUACGUCG----CGGCGGCGgcuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.