Results 41 - 60 of 351 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6503 | 5' | -56.9 | NC_001847.1 | + | 3100 | 0.66 | 0.848782 |
Target: 5'- cGCgg-CcgGCAGgccgcggccCGCCGCgGCCGAg- -3' miRNA: 3'- -CGauaGuaCGUC---------GCGGCGgCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 3217 | 0.66 | 0.848782 |
Target: 5'- gGCgcaCGUGCcuccGCGCCGCCGCgGc-- -3' miRNA: 3'- -CGauaGUACGu---CGCGGCGGCGgCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 11505 | 0.66 | 0.856686 |
Target: 5'- gGCgccuUCA-GCcaagGGCGCCGCCccgGCCGAg- -3' miRNA: 3'- -CGau--AGUaCG----UCGCGGCGG---CGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 4983 | 0.66 | 0.856686 |
Target: 5'- aGCUGggGUGCGGCgGCCGCgGCa---- -3' miRNA: 3'- -CGAUagUACGUCG-CGGCGgCGgcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 13541 | 0.66 | 0.848782 |
Target: 5'- cGCUAg---GCAGCGCgaCGCUGCaCGAc- -3' miRNA: 3'- -CGAUaguaCGUCGCG--GCGGCG-GCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 96348 | 0.66 | 0.840678 |
Target: 5'- gGCUggCGUGCGacGCGCUGCCGgCa--- -3' miRNA: 3'- -CGAuaGUACGU--CGCGGCGGCgGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 83513 | 0.66 | 0.83322 |
Target: 5'- cGCUG-CGUGCcuuccugcgguccguGCGCCGCC-CCGGg- -3' miRNA: 3'- -CGAUaGUACGu--------------CGCGGCGGcGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 106310 | 0.66 | 0.840678 |
Target: 5'- gGCgg-CA-GCGGCGCCGUCacgcucCCGGUGa -3' miRNA: 3'- -CGauaGUaCGUCGCGGCGGc-----GGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 104194 | 0.66 | 0.840678 |
Target: 5'- aGCg--CcgGCAGCaCgCGCUGCCGGUa -3' miRNA: 3'- -CGauaGuaCGUCGcG-GCGGCGGCUAc -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 106120 | 0.66 | 0.815244 |
Target: 5'- gGCgagCGcgGCgcgGGCGCCGCUGCCGccGg -3' miRNA: 3'- -CGauaGUa-CG---UCGCGGCGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 72453 | 0.66 | 0.832382 |
Target: 5'- cGCUGgac-GCGGCGCUGCaccacggcgUGCUGAUGa -3' miRNA: 3'- -CGAUaguaCGUCGCGGCG---------GCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 70954 | 0.66 | 0.832382 |
Target: 5'- cGCg--CAUGUuccCGCCGCgGUCGGUGu -3' miRNA: 3'- -CGauaGUACGuc-GCGGCGgCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 133181 | 0.66 | 0.832382 |
Target: 5'- cGCUG----GCGGCGCCGCcCGgCGAg- -3' miRNA: 3'- -CGAUaguaCGUCGCGGCG-GCgGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 37655 | 0.66 | 0.815244 |
Target: 5'- cGC--UCGUGCGGCaGCCGCCcaGCgaGGUGc -3' miRNA: 3'- -CGauAGUACGUCG-CGGCGG--CGg-CUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 111265 | 0.66 | 0.815244 |
Target: 5'- cGCcggGUCGgagGCGGCGCCGg-GCCGggGg -3' miRNA: 3'- -CGa--UAGUa--CGUCGCGGCggCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 81187 | 0.66 | 0.823901 |
Target: 5'- gGCUcgCG-GCGGCGCCaGCCGgCGc-- -3' miRNA: 3'- -CGAuaGUaCGUCGCGG-CGGCgGCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 134263 | 0.66 | 0.823901 |
Target: 5'- gGCggccCcgGCGcGgGCCGCCGCCGcgcGUGg -3' miRNA: 3'- -CGaua-GuaCGU-CgCGGCGGCGGC---UAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 48371 | 0.66 | 0.823901 |
Target: 5'- aGC-GUCAcgaccGUGGCGCCGCCggGCCGGg- -3' miRNA: 3'- -CGaUAGUa----CGUCGCGGCGG--CGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 79376 | 0.66 | 0.856686 |
Target: 5'- aGCUGUgcgGCAGCGCgCGgCuCGCCG-UGg -3' miRNA: 3'- -CGAUAguaCGUCGCG-GC-G-GCGGCuAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 131985 | 0.66 | 0.848782 |
Target: 5'- cGCUGgag-GCGGCccGCCgcGCCGCCGGc- -3' miRNA: 3'- -CGAUaguaCGUCG--CGG--CGGCGGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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