Results 41 - 60 of 351 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6503 | 5' | -56.9 | NC_001847.1 | + | 50376 | 0.76 | 0.317783 |
Target: 5'- cGCUAag--GaCGGCGCCGCCGCCGGc- -3' miRNA: 3'- -CGAUaguaC-GUCGCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 61641 | 0.76 | 0.317783 |
Target: 5'- cGCUGgacUGCAGCGCCGCCaCCGcgGc -3' miRNA: 3'- -CGAUaguACGUCGCGGCGGcGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 89105 | 0.77 | 0.269694 |
Target: 5'- uGCgcaCAgaagGCAGCGCCGCC-CCGGUGg -3' miRNA: 3'- -CGauaGUa---CGUCGCGGCGGcGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 46199 | 0.78 | 0.25095 |
Target: 5'- aGCgg-CcgGCGGCgGCCGCCGCCGGg- -3' miRNA: 3'- -CGauaGuaCGUCG-CGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 53855 | 0.78 | 0.244945 |
Target: 5'- cGCUGgcggCGcugGCGGCGCCGaCCGCCGcgGg -3' miRNA: 3'- -CGAUa---GUa--CGUCGCGGC-GGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 132172 | 0.73 | 0.459779 |
Target: 5'- cGCggccCcgGCGGCGCUGCgCGCCGAg- -3' miRNA: 3'- -CGaua-GuaCGUCGCGGCG-GCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 133996 | 0.73 | 0.469151 |
Target: 5'- cGCUGcCGgaGCcgcgcgccgaGGCGCCGCCGCUGGUGc -3' miRNA: 3'- -CGAUaGUa-CG----------UCGCGGCGGCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 84115 | 0.71 | 0.53723 |
Target: 5'- gGCggcGUCGUGCAGCcgauGCCGCCGCa---- -3' miRNA: 3'- -CGa--UAGUACGUCG----CGGCGGCGgcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 119891 | 0.71 | 0.53723 |
Target: 5'- gGCgaucgCGUGCguGGcCGCCGCCGCCGccGg -3' miRNA: 3'- -CGaua--GUACG--UC-GCGGCGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 40181 | 0.71 | 0.53723 |
Target: 5'- gGCUG-CGcGCGGCGgaaCgGCCGCCGAUGc -3' miRNA: 3'- -CGAUaGUaCGUCGC---GgCGGCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 58070 | 0.72 | 0.531246 |
Target: 5'- cGCU-UCGgcgGCgAGCGCCGCCGgaguaccagcagcuuCCGAUGg -3' miRNA: 3'- -CGAuAGUa--CG-UCGCGGCGGC---------------GGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 80164 | 0.72 | 0.526278 |
Target: 5'- cGCUGUgGuacgcguUGCAguGCGCCGCCGCCu--- -3' miRNA: 3'- -CGAUAgU-------ACGU--CGCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 70214 | 0.72 | 0.526278 |
Target: 5'- uGCUGcgCGUGCuGCuggagaaGgCGCCGCCGAUGu -3' miRNA: 3'- -CGAUa-GUACGuCG-------CgGCGGCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 54588 | 0.72 | 0.517381 |
Target: 5'- gGCUGggCGgcgcugGCGGCGCgCGCCcgcGCCGAUGc -3' miRNA: 3'- -CGAUa-GUa-----CGUCGCG-GCGG---CGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 73787 | 0.72 | 0.507566 |
Target: 5'- cCUcgCcgGUGCGGgGCUGCCuGCCGGUGg -3' miRNA: 3'- cGAuaG--UACGUCgCGGCGG-CGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 112992 | 0.72 | 0.497831 |
Target: 5'- cGCUGcgCcgGCuuuugcGCGCCGCCGCCGc-- -3' miRNA: 3'- -CGAUa-GuaCGu-----CGCGGCGGCGGCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 36360 | 0.72 | 0.48818 |
Target: 5'- cGCgcgCAcGCGGCGCCGCCGCgGc-- -3' miRNA: 3'- -CGauaGUaCGUCGCGGCGGCGgCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 105251 | 0.72 | 0.478619 |
Target: 5'- gGCgg-CcgGCAGgGCCGCCGCCu--- -3' miRNA: 3'- -CGauaGuaCGUCgCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 131650 | 0.72 | 0.478619 |
Target: 5'- ----gCGUGaCGGCGCCGCUGCCGccGg -3' miRNA: 3'- cgauaGUAC-GUCGCGGCGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 55438 | 0.73 | 0.469151 |
Target: 5'- cGCgGUCcUGCAGCGCCuGgCGCCGGc- -3' miRNA: 3'- -CGaUAGuACGUCGCGG-CgGCGGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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