miRNA display CGI


Results 41 - 60 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 18011 0.67 0.797431
Target:  5'- gGCUGUUggGCguggggGGCGuuG-CGCCGGUGg -3'
miRNA:   3'- -CGAUAGuaCG------UCGCggCgGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 18415 0.66 0.85979
Target:  5'- cGCgg-CGUGCAgggccuuggccacguGCGCCGCgGCCa--- -3'
miRNA:   3'- -CGauaGUACGU---------------CGCGGCGgCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 18454 0.68 0.730792
Target:  5'- ----cCGUGCGGUGCCGCgcccgcagCGCCGGa- -3'
miRNA:   3'- cgauaGUACGUCGCGGCG--------GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 18526 0.67 0.806418
Target:  5'- cGCUG-CggGC-GCGCCGCCGuCCGc-- -3'
miRNA:   3'- -CGAUaGuaCGuCGCGGCGGC-GGCuac -5'
6503 5' -56.9 NC_001847.1 + 18734 0.7 0.639312
Target:  5'- aGCgcgCGgcccgggGCccagAGCGCCGCCGCCGcgGc -3'
miRNA:   3'- -CGauaGUa------CG----UCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 18933 0.67 0.779012
Target:  5'- aGgUGUCuucCAGCGCCGCCGCgGc-- -3'
miRNA:   3'- -CgAUAGuacGUCGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 19329 0.75 0.363918
Target:  5'- gGCUGUUAacGCaAGCGCCGCgGCCGGg- -3'
miRNA:   3'- -CGAUAGUa-CG-UCGCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 19910 0.67 0.769598
Target:  5'- aGCg--CAcGagGGCGUCGCCGCCGAc- -3'
miRNA:   3'- -CGauaGUaCg-UCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 21966 0.66 0.856686
Target:  5'- cGCUGggccGCGGCGCCgguuGCCGCCcGcgGu -3'
miRNA:   3'- -CGAUaguaCGUCGCGG----CGGCGG-CuaC- -5'
6503 5' -56.9 NC_001847.1 + 22278 0.73 0.459779
Target:  5'- cGCcGUag-GCAGCGCCGCCgagGCCGAc- -3'
miRNA:   3'- -CGaUAguaCGUCGCGGCGG---CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 22813 0.67 0.797431
Target:  5'- uGCgggCcgGCGGCgGCCGCucccCGCCGAg- -3'
miRNA:   3'- -CGauaGuaCGUCG-CGGCG----GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 24761 0.68 0.740647
Target:  5'- gGCUGagGUGCGacGCGCgGUCGUCGAa- -3'
miRNA:   3'- -CGAUagUACGU--CGCGgCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 25835 0.67 0.788293
Target:  5'- gGCUGUC-UGCAugaacGCGUCGCuCGCCa--- -3'
miRNA:   3'- -CGAUAGuACGU-----CGCGGCG-GCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 26514 0.67 0.779012
Target:  5'- ---uUC-UGCAGCGUCGCcCGCCGu-- -3'
miRNA:   3'- cgauAGuACGUCGCGGCG-GCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 26781 0.79 0.206196
Target:  5'- cGCUGcCGcUGCuGcCGCCGCCGCCGGUGc -3'
miRNA:   3'- -CGAUaGU-ACGuC-GCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 27286 0.66 0.815244
Target:  5'- --cGUCccGuCGGaGCCGCCGCCGGUc -3'
miRNA:   3'- cgaUAGuaC-GUCgCGGCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 27491 0.69 0.659904
Target:  5'- gGCU-UCG-GCGGCagaggccucgGCCGCCGCCGcgGc -3'
miRNA:   3'- -CGAuAGUaCGUCG----------CGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 28335 0.66 0.815244
Target:  5'- cGCUcgCcggcggGCAGCGCgGCCGUCa--- -3'
miRNA:   3'- -CGAuaGua----CGUCGCGgCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 28443 0.68 0.740647
Target:  5'- gGCUA-CGccGCGGCgccgcgcgacggGCCGCCGCCGcUGg -3'
miRNA:   3'- -CGAUaGUa-CGUCG------------CGGCGGCGGCuAC- -5'
6503 5' -56.9 NC_001847.1 + 28496 0.69 0.6906
Target:  5'- -------cGCGGCGCCGCCGCUa--- -3'
miRNA:   3'- cgauaguaCGUCGCGGCGGCGGcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.