miRNA display CGI


Results 21 - 40 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 6492 0.68 0.76006
Target:  5'- uGCagGUCGUagGUAGCGgCGUCGCCGGc- -3'
miRNA:   3'- -CGa-UAGUA--CGUCGCgGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 6960 0.66 0.823901
Target:  5'- cGCgggGUCGcgGCGGCGCUuCCGcCCGcgGg -3'
miRNA:   3'- -CGa--UAGUa-CGUCGCGGcGGC-GGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 7357 0.69 0.659904
Target:  5'- aGCcGUCA-GC-GCGCUGCUGCCGGc- -3'
miRNA:   3'- -CGaUAGUaCGuCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 8452 0.66 0.815244
Target:  5'- cGCcggGUCGgagGCGGCGCCGg-GCCGggGg -3'
miRNA:   3'- -CGa--UAGUa--CGUCGCGGCggCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 8601 0.67 0.806418
Target:  5'- cGCgagcGUCAgccGCAGCGCaagccCCGCCGggGg -3'
miRNA:   3'- -CGa---UAGUa--CGUCGCGgc---GGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 9731 0.67 0.788293
Target:  5'- ---cUCcgGCGGCGCCggggcagucGCCGUCGGUc -3'
miRNA:   3'- cgauAGuaCGUCGCGG---------CGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 10179 0.72 0.497831
Target:  5'- cGCUGcgCcgGCuuuugcGCGCCGCCGCCGc-- -3'
miRNA:   3'- -CGAUa-GuaCGu-----CGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 10355 0.67 0.788293
Target:  5'- -------gGCGGCgaggggGCCGCCGCCGAa- -3'
miRNA:   3'- cgauaguaCGUCG------CGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 11399 1.09 0.001914
Target:  5'- uGCUAUCAUGCAGCGCCGCCGCCGAUGc -3'
miRNA:   3'- -CGAUAGUACGUCGCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 11406 0.67 0.797431
Target:  5'- gGCcAUguUGCGGCccCCGUCGCCGAg- -3'
miRNA:   3'- -CGaUAguACGUCGc-GGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 11505 0.66 0.856686
Target:  5'- gGCgccuUCA-GCcaagGGCGCCGCCccgGCCGAg- -3'
miRNA:   3'- -CGau--AGUaCG----UCGCGGCGG---CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 11676 0.67 0.797431
Target:  5'- aGCcgagCccGCGGCgGCCGUCGCCGGg- -3'
miRNA:   3'- -CGaua-GuaCGUCG-CGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 13123 0.67 0.788293
Target:  5'- gGCgcgCggGCGGCGCCgcGCCGCCu--- -3'
miRNA:   3'- -CGauaGuaCGUCGCGG--CGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 13529 0.68 0.720851
Target:  5'- aGCag-CAgcgGCAGCaaCCGCCGCCGGg- -3'
miRNA:   3'- -CGauaGUa--CGUCGc-GGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 13541 0.66 0.848782
Target:  5'- cGCUAg---GCAGCGCgaCGCUGCaCGAc- -3'
miRNA:   3'- -CGAUaguaCGUCGCG--GCGGCG-GCUac -5'
6503 5' -56.9 NC_001847.1 + 13871 0.7 0.629003
Target:  5'- uGCUAgCGgacGCGGCaCUGCCGCUGGUGc -3'
miRNA:   3'- -CGAUaGUa--CGUCGcGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 14539 0.74 0.397154
Target:  5'- cGCUG-CccGCGGUGCCGCCGuaGAUGc -3'
miRNA:   3'- -CGAUaGuaCGUCGCGGCGGCggCUAC- -5'
6503 5' -56.9 NC_001847.1 + 14787 0.72 0.52727
Target:  5'- aGCUcgacgGUCccguUGUAGCGCCGCCcgGCCGGg- -3'
miRNA:   3'- -CGA-----UAGu---ACGUCGCGGCGG--CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 15542 0.67 0.779012
Target:  5'- uGCUGgcgCcgGUGCGcGCGCgGCCGUCGGg- -3'
miRNA:   3'- -CGAUa--G--UACGU-CGCGgCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 15903 0.67 0.806418
Target:  5'- cGCUAUCGacggccccaUGCcuGCcCCGCCGCCccgcGGUGg -3'
miRNA:   3'- -CGAUAGU---------ACGu-CGcGGCGGCGG----CUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.