miRNA display CGI


Results 21 - 40 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 131407 0.69 0.6906
Target:  5'- cGCUGcacggccgCGUGC-GCGCCGUgGCCGGc- -3'
miRNA:   3'- -CGAUa-------GUACGuCGCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 131324 0.69 0.649615
Target:  5'- gGCguggcCcgGCAgcGCGCCGCCGCCGc-- -3'
miRNA:   3'- -CGaua--GuaCGU--CGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 131256 0.68 0.740647
Target:  5'- gGCUA-CGccGCGGCgccgcgcgacggGCCGCCGCCGcUGg -3'
miRNA:   3'- -CGAUaGUa-CGUCG------------CGGCGGCGGCuAC- -5'
6503 5' -56.9 NC_001847.1 + 130716 0.68 0.750406
Target:  5'- cGCguuUCccUGCGGCGCgCGCUGCCGccGu -3'
miRNA:   3'- -CGau-AGu-ACGUCGCG-GCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 130099 0.66 0.815244
Target:  5'- --cGUCccGuCGGaGCCGCCGCCGGUc -3'
miRNA:   3'- cgaUAGuaC-GUCgCGGCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 129959 0.7 0.627973
Target:  5'- cGCgcUC--GCGGCGCuguuccccgaaauCGCCGCCGAUGc -3'
miRNA:   3'- -CGauAGuaCGUCGCG-------------GCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 129654 0.71 0.577651
Target:  5'- gGCgGUCGagguUGCGGCgGCCGCUGCCGc-- -3'
miRNA:   3'- -CGaUAGU----ACGUCG-CGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 129594 0.79 0.206196
Target:  5'- cGCUGcCGcUGCuGcCGCCGCCGCCGGUGc -3'
miRNA:   3'- -CGAUaGU-ACGuC-GCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 128791 0.71 0.577651
Target:  5'- gGCUAcgCccGCGGCGCgguUGCCGCCGGg- -3'
miRNA:   3'- -CGAUa-GuaCGUCGCG---GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 127775 0.67 0.787371
Target:  5'- aCUGUCA-GCGGCGCCggcagcaGCgCGCUGAc- -3'
miRNA:   3'- cGAUAGUaCGUCGCGG-------CG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 127039 0.66 0.840678
Target:  5'- cGCg--CcUGCgcuGGCGCCGCguCGCCGAUc -3'
miRNA:   3'- -CGauaGuACG---UCGCGGCG--GCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 123479 0.71 0.58787
Target:  5'- -----gAUGCAGCGCCcccuucaccGCCGCCGGa- -3'
miRNA:   3'- cgauagUACGUCGCGG---------CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 123410 0.67 0.806418
Target:  5'- gGCgGUCccccaGCAGCGCgucauacgUGCCGCCGAa- -3'
miRNA:   3'- -CGaUAGua---CGUCGCG--------GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 122955 0.72 0.517381
Target:  5'- cGCUAUCGUagucGuCGGCGCugucgcugcuauCGCCGUCGAUGu -3'
miRNA:   3'- -CGAUAGUA----C-GUCGCG------------GCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 122614 0.71 0.58787
Target:  5'- cGCgcagGUC-UGCGGCGUCGUCGCCu--- -3'
miRNA:   3'- -CGa---UAGuACGUCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 122520 0.73 0.450507
Target:  5'- gGCUGUaCGaGCAGUGCCGCCcggacccuGCCGGUc -3'
miRNA:   3'- -CGAUA-GUaCGUCGCGGCGG--------CGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 121599 0.7 0.598123
Target:  5'- gGC-GUCGUGCAGCGUcgCGCUGCCu--- -3'
miRNA:   3'- -CGaUAGUACGUCGCG--GCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 121482 0.67 0.806418
Target:  5'- gGCcAUCA-GCAGCGUCGUCGCgGu-- -3'
miRNA:   3'- -CGaUAGUaCGUCGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 121430 0.66 0.832382
Target:  5'- aGCcGUUGaGCGGCccgaCCGCCGCCGGg- -3'
miRNA:   3'- -CGaUAGUaCGUCGc---GGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 121121 0.68 0.740647
Target:  5'- aCUG-CGcGCuGCGCCGCCGCCu--- -3'
miRNA:   3'- cGAUaGUaCGuCGCGGCGGCGGcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.