miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 134679 0.67 0.769598
Target:  5'- cGCUG-C-UGCcGcCGCCGCCGCCGc-- -3'
miRNA:   3'- -CGAUaGuACGuC-GCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 134263 0.66 0.823901
Target:  5'- gGCggccCcgGCGcGgGCCGCCGCCGcgcGUGg -3'
miRNA:   3'- -CGaua-GuaCGU-CgCGGCGGCGGC---UAC- -5'
6503 5' -56.9 NC_001847.1 + 134142 0.68 0.750406
Target:  5'- gGCcugGUgGaGCGcGUGCCGCCGCCGGc- -3'
miRNA:   3'- -CGa--UAgUaCGU-CGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 134032 0.7 0.618697
Target:  5'- nGCUGgaggCcgcgGCGGCGCCGCCcgcgGCCGcgGc -3'
miRNA:   3'- -CGAUa---Gua--CGUCGCGGCGG----CGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 133996 0.73 0.469151
Target:  5'- cGCUGcCGgaGCcgcgcgccgaGGCGCCGCCGCUGGUGc -3'
miRNA:   3'- -CGAUaGUa-CG----------UCGCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 133884 0.68 0.710832
Target:  5'- cGCUGggggCucgGC-GCGCCGCUgcgGCCGGUGu -3'
miRNA:   3'- -CGAUa---Gua-CGuCGCGGCGG---CGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 133755 0.67 0.769598
Target:  5'- cGCgaguaCcgGCAGCGCgUGCUGCCGGc- -3'
miRNA:   3'- -CGaua--GuaCGUCGCG-GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 133201 0.67 0.769598
Target:  5'- cGCUGgaggaGCucuGCGCCGCgCGCCGGc- -3'
miRNA:   3'- -CGAUagua-CGu--CGCGGCG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 133181 0.66 0.832382
Target:  5'- cGCUG----GCGGCGCCGCcCGgCGAg- -3'
miRNA:   3'- -CGAUaguaCGUCGCGGCG-GCgGCUac -5'
6503 5' -56.9 NC_001847.1 + 132851 0.7 0.598123
Target:  5'- uGCcgcCcgGCGGCcCCGCCGCCGAc- -3'
miRNA:   3'- -CGauaGuaCGUCGcGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 132767 0.69 0.67017
Target:  5'- gGCg--CcgGCgaaaAGcCGCCGCCGCCGAc- -3'
miRNA:   3'- -CGauaGuaCG----UC-GCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 132673 0.66 0.815244
Target:  5'- gGCgg-CG-GgGGCGCCGCCGCCc--- -3'
miRNA:   3'- -CGauaGUaCgUCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 132555 0.7 0.608401
Target:  5'- gGCUcgCGUGCGGcCGCgGCgGCCGc-- -3'
miRNA:   3'- -CGAuaGUACGUC-GCGgCGgCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 132386 0.68 0.707812
Target:  5'- gGCg--CcgGCgccGGCGCCGCCgcgccgggccggggGCCGGUGg -3'
miRNA:   3'- -CGauaGuaCG---UCGCGGCGG--------------CGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 132172 0.73 0.459779
Target:  5'- cGCggccCcgGCGGCGCUGCgCGCCGAg- -3'
miRNA:   3'- -CGaua-GuaCGUCGCGGCG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 132136 0.75 0.355915
Target:  5'- cCUAUUggGCGGCGCUGCUGCCGc-- -3'
miRNA:   3'- cGAUAGuaCGUCGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 131985 0.66 0.848782
Target:  5'- cGCUGgag-GCGGCccGCCgcGCCGCCGGc- -3'
miRNA:   3'- -CGAUaguaCGUCG--CGG--CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 131949 0.66 0.832382
Target:  5'- aGCUggCGgaccGCuGCGCCGUCGCCu--- -3'
miRNA:   3'- -CGAuaGUa---CGuCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 131874 0.68 0.750406
Target:  5'- uGCUcgCcgGCcgcgcggcgccGGCGCCccuGCCGCCGGc- -3'
miRNA:   3'- -CGAuaGuaCG-----------UCGCGG---CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 131650 0.72 0.478619
Target:  5'- ----gCGUGaCGGCGCCGCUGCCGccGg -3'
miRNA:   3'- cgauaGUAC-GUCGCGGCGGCGGCuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.