miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 11399 1.09 0.001914
Target:  5'- uGCUAUCAUGCAGCGCCGCCGCCGAUGc -3'
miRNA:   3'- -CGAUAGUACGUCGCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 77064 0.82 0.133596
Target:  5'- uGCUGguacUCcgGCGGCGCuCGCCGCCGAa- -3'
miRNA:   3'- -CGAU----AGuaCGUCGCG-GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 129594 0.79 0.206196
Target:  5'- cGCUGcCGcUGCuGcCGCCGCCGCCGGUGc -3'
miRNA:   3'- -CGAUaGU-ACGuC-GCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 26781 0.79 0.206196
Target:  5'- cGCUGcCGcUGCuGcCGCCGCCGCCGGUGc -3'
miRNA:   3'- -CGAUaGU-ACGuC-GCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 53855 0.78 0.244945
Target:  5'- cGCUGgcggCGcugGCGGCGCCGaCCGCCGcgGg -3'
miRNA:   3'- -CGAUa---GUa--CGUCGCGGC-GGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 46199 0.78 0.25095
Target:  5'- aGCgg-CcgGCGGCgGCCGCCGCCGGg- -3'
miRNA:   3'- -CGauaGuaCGUCG-CGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 71182 0.77 0.269694
Target:  5'- gGgUGUCGcGCAGCGCCGgCGCCGGc- -3'
miRNA:   3'- -CgAUAGUaCGUCGCGGCgGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 89105 0.77 0.269694
Target:  5'- uGCgcaCAgaagGCAGCGCCGCC-CCGGUGg -3'
miRNA:   3'- -CGauaGUa---CGUCGCGGCGGcGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 50376 0.76 0.317783
Target:  5'- cGCUAag--GaCGGCGCCGCCGCCGGc- -3'
miRNA:   3'- -CGAUaguaC-GUCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 61641 0.76 0.317783
Target:  5'- cGCUGgacUGCAGCGCCGCCaCCGcgGc -3'
miRNA:   3'- -CGAUaguACGUCGCGGCGGcGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 69084 0.75 0.348037
Target:  5'- cGC-GUCGccccCGGCGCCGCCGCCGAc- -3'
miRNA:   3'- -CGaUAGUac--GUCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 132136 0.75 0.355915
Target:  5'- cCUAUUggGCGGCGCUGCUGCCGc-- -3'
miRNA:   3'- cGAUAGuaCGUCGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 19329 0.75 0.363918
Target:  5'- gGCUGUUAacGCaAGCGCCGCgGCCGGg- -3'
miRNA:   3'- -CGAUAGUa-CG-UCGCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 51232 0.75 0.372044
Target:  5'- uGCUcgCggGC-GCGCCGCUGCCGGc- -3'
miRNA:   3'- -CGAuaGuaCGuCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 79514 0.75 0.372044
Target:  5'- uGUUGUCGgggcugGCGGCGUCGUCGCCGucgGg -3'
miRNA:   3'- -CGAUAGUa-----CGUCGCGGCGGCGGCua-C- -5'
6503 5' -56.9 NC_001847.1 + 116347 0.75 0.372044
Target:  5'- cGCUGgc--GC-GCGCCGCCGCCGcgGa -3'
miRNA:   3'- -CGAUaguaCGuCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 109391 0.74 0.380293
Target:  5'- gGCUGcgGUGCcGUGCCGCCGCCGc-- -3'
miRNA:   3'- -CGAUagUACGuCGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 87510 0.74 0.388664
Target:  5'- uGCUugcaCGUGCc-CGCCGCCGCCGAa- -3'
miRNA:   3'- -CGAua--GUACGucGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 14539 0.74 0.397154
Target:  5'- cGCUG-CccGCGGUGCCGCCGuaGAUGc -3'
miRNA:   3'- -CGAUaGuaCGUCGCGGCGGCggCUAC- -5'
6503 5' -56.9 NC_001847.1 + 104811 0.74 0.397154
Target:  5'- uGCUcGUCGUcCAGC-CCGCCGCCGggGg -3'
miRNA:   3'- -CGA-UAGUAcGUCGcGGCGGCGGCuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.