miRNA display CGI


Results 21 - 40 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 44077 0.74 0.400583
Target:  5'- aGCUGUCGUGCcugcugcggcgucuGCGcCCGCCGCCugcgcgcaaGAUGa -3'
miRNA:   3'- -CGAUAGUACGu-------------CGC-GGCGGCGG---------CUAC- -5'
6503 5' -56.9 NC_001847.1 + 43488 0.74 0.405762
Target:  5'- cGC-GUCccGCcGCGCCGCCGUCGAUc -3'
miRNA:   3'- -CGaUAGuaCGuCGCGGCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 74315 0.74 0.414488
Target:  5'- uGCUGUuuccCAUGaCGGUGCCGCUGCCGc-- -3'
miRNA:   3'- -CGAUA----GUAC-GUCGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 89279 0.73 0.423327
Target:  5'- cGCUGUUucGC-GCGCCGCgGCCGAg- -3'
miRNA:   3'- -CGAUAGuaCGuCGCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 34371 0.73 0.440429
Target:  5'- cGCUG--AUGCGGCcgaaacaacggcgGCCGCCGCCGcgGc -3'
miRNA:   3'- -CGAUagUACGUCG-------------CGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 3747 0.73 0.44134
Target:  5'- cGCggcCGUGCAGCGCuucguCGCCGUCGAg- -3'
miRNA:   3'- -CGauaGUACGUCGCG-----GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 122520 0.73 0.450507
Target:  5'- gGCUGUaCGaGCAGUGCCGCCcggacccuGCCGGUc -3'
miRNA:   3'- -CGAUA-GUaCGUCGCGGCGG--------CGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 63219 0.73 0.450507
Target:  5'- cGUUuacgCGUGCGcGCGCCGCgCGCCGGg- -3'
miRNA:   3'- -CGAua--GUACGU-CGCGGCG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 88943 0.73 0.450507
Target:  5'- ----cCcgGCGGCgGCCGCCGCCGGc- -3'
miRNA:   3'- cgauaGuaCGUCG-CGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 22278 0.73 0.459779
Target:  5'- cGCcGUag-GCAGCGCCGCCgagGCCGAc- -3'
miRNA:   3'- -CGaUAguaCGUCGCGGCGG---CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 29359 0.73 0.459779
Target:  5'- cGCggccCcgGCGGCGCUGCgCGCCGAg- -3'
miRNA:   3'- -CGaua-GuaCGUCGCGGCG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 132172 0.73 0.459779
Target:  5'- cGCggccCcgGCGGCGCUGCgCGCCGAg- -3'
miRNA:   3'- -CGaua-GuaCGUCGCGGCG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 55438 0.73 0.469151
Target:  5'- cGCgGUCcUGCAGCGCCuGgCGCCGGc- -3'
miRNA:   3'- -CGaUAGuACGUCGCGG-CgGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 31183 0.73 0.469151
Target:  5'- cGCUGcCGgaGCcgcgcgccgaGGCGCCGCCGCUGGUGc -3'
miRNA:   3'- -CGAUaGUa-CG----------UCGCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 133996 0.73 0.469151
Target:  5'- cGCUGcCGgaGCcgcgcgccgaGGCGCCGCCGCUGGUGc -3'
miRNA:   3'- -CGAUaGUa-CG----------UCGCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 28837 0.72 0.478619
Target:  5'- ----gCGUGaCGGCGCCGCUGCCGccGg -3'
miRNA:   3'- cgauaGUAC-GUCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 105251 0.72 0.478619
Target:  5'- gGCgg-CcgGCAGgGCCGCCGCCu--- -3'
miRNA:   3'- -CGauaGuaCGUCgCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 131650 0.72 0.478619
Target:  5'- ----gCGUGaCGGCGCCGCUGCCGccGg -3'
miRNA:   3'- cgauaGUAC-GUCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 86498 0.72 0.478619
Target:  5'- gGCUG-CGggggcgGCGGCGCCccGCCGCCGcgGc -3'
miRNA:   3'- -CGAUaGUa-----CGUCGCGG--CGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 2438 0.72 0.478619
Target:  5'- gGCgg-CcgGCAGgGCCGCCGCCu--- -3'
miRNA:   3'- -CGauaGuaCGUCgCGGCGGCGGcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.