Results 21 - 40 of 351 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6503 | 5' | -56.9 | NC_001847.1 | + | 35320 | 0.66 | 0.823901 |
Target: 5'- cGCUGgaagCggGCGuGCGCCuggaGCUGCCGAg- -3' miRNA: 3'- -CGAUa---GuaCGU-CGCGG----CGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 54049 | 0.66 | 0.832382 |
Target: 5'- --cGUCGgcgcGCGGCgagGCCGCCGCCa--- -3' miRNA: 3'- cgaUAGUa---CGUCG---CGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 37655 | 0.66 | 0.815244 |
Target: 5'- cGC--UCGUGCGGCaGCCGCCcaGCgaGGUGc -3' miRNA: 3'- -CGauAGUACGUCG-CGGCGG--CGg-CUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 54398 | 0.66 | 0.823901 |
Target: 5'- cGCgggCGagGCGGgCGCCGCCGCgGuUGg -3' miRNA: 3'- -CGauaGUa-CGUC-GCGGCGGCGgCuAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 33007 | 0.66 | 0.815244 |
Target: 5'- cGCcgugGUCGcGCggAGUGCCGCCGCCc--- -3' miRNA: 3'- -CGa---UAGUaCG--UCGCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 6960 | 0.66 | 0.823901 |
Target: 5'- cGCgggGUCGcgGCGGCGCUuCCGcCCGcgGg -3' miRNA: 3'- -CGa--UAGUa-CGUCGCGGcGGC-GGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 133181 | 0.66 | 0.832382 |
Target: 5'- cGCUG----GCGGCGCCGCcCGgCGAg- -3' miRNA: 3'- -CGAUaguaCGUCGCGGCG-GCgGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 72982 | 0.66 | 0.815244 |
Target: 5'- gGCUA-CAcgGCGGCcuaCGCCGCCGcgGc -3' miRNA: 3'- -CGAUaGUa-CGUCGcg-GCGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 48371 | 0.66 | 0.823901 |
Target: 5'- aGC-GUCAcgaccGUGGCGCCGCCggGCCGGg- -3' miRNA: 3'- -CGaUAGUa----CGUCGCGGCGG--CGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 37697 | 0.66 | 0.832382 |
Target: 5'- cGCUGgaccucgucaCGUGC-GCGCUGCUGCUGGg- -3' miRNA: 3'- -CGAUa---------GUACGuCGCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 111265 | 0.66 | 0.815244 |
Target: 5'- cGCcggGUCGgagGCGGCGCCGg-GCCGggGg -3' miRNA: 3'- -CGa--UAGUa--CGUCGCGGCggCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 13541 | 0.66 | 0.848782 |
Target: 5'- cGCUAg---GCAGCGCgaCGCUGCaCGAc- -3' miRNA: 3'- -CGAUaguaCGUCGCG--GCGGCG-GCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 81022 | 0.66 | 0.815244 |
Target: 5'- aGCg--CAUG-GGCGaCGCCGCCGcgGa -3' miRNA: 3'- -CGauaGUACgUCGCgGCGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 106120 | 0.66 | 0.815244 |
Target: 5'- gGCgagCGcgGCgcgGGCGCCGCUGCCGccGg -3' miRNA: 3'- -CGauaGUa-CG---UCGCGGCGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 83513 | 0.66 | 0.83322 |
Target: 5'- cGCUG-CGUGCcuuccugcgguccguGCGCCGCC-CCGGg- -3' miRNA: 3'- -CGAUaGUACGu--------------CGCGGCGGcGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 48639 | 0.66 | 0.823901 |
Target: 5'- cGCgg-CG-GCggGGCGCCGCCGCCc--- -3' miRNA: 3'- -CGauaGUaCG--UCGCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 72453 | 0.66 | 0.832382 |
Target: 5'- cGCUGgac-GCGGCGCUGCaccacggcgUGCUGAUGa -3' miRNA: 3'- -CGAUaguaCGUCGCGGCG---------GCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 76906 | 0.66 | 0.815244 |
Target: 5'- gGCgGUCGcGCGcCGCCGCUGCCGc-- -3' miRNA: 3'- -CGaUAGUaCGUcGCGGCGGCGGCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 86947 | 0.66 | 0.856686 |
Target: 5'- ----aCA-GCAGCGCCGCgCGCCc--- -3' miRNA: 3'- cgauaGUaCGUCGCGGCG-GCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 32752 | 0.66 | 0.815244 |
Target: 5'- gGCUAUUuucgcggGCGGCGCUucgcgacggccgGCCGCUGGa- -3' miRNA: 3'- -CGAUAGua-----CGUCGCGG------------CGGCGGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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