miRNA display CGI


Results 21 - 40 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 51272 0.66 0.848782
Target:  5'- -----gAUGCAGCGCCGCgGCgCGc-- -3'
miRNA:   3'- cgauagUACGUCGCGGCGgCG-GCuac -5'
6503 5' -56.9 NC_001847.1 + 60039 0.66 0.848782
Target:  5'- ---cUCggGCAaGCGCCggggcGCCGCCGAc- -3'
miRNA:   3'- cgauAGuaCGU-CGCGG-----CGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 105913 0.66 0.848782
Target:  5'- cGCgg-CcgGCAGgccgcggccCGCCGCgGCCGAg- -3'
miRNA:   3'- -CGauaGuaCGUC---------GCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 35508 0.66 0.846371
Target:  5'- uGCUcggCGUGC-GCGCCGgggcuuguauuuuuCCGCCGGa- -3'
miRNA:   3'- -CGAua-GUACGuCGCGGC--------------GGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 49492 0.66 0.840678
Target:  5'- uGCUgAUCAcccUGauCGGCGCCGCuuCGCCGGg- -3'
miRNA:   3'- -CGA-UAGU---AC--GUCGCGGCG--GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 127039 0.66 0.840678
Target:  5'- cGCg--CcUGCgcuGGCGCCGCguCGCCGAUc -3'
miRNA:   3'- -CGauaGuACG---UCGCGGCG--GCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 80525 0.66 0.840678
Target:  5'- cGCUGUCGgcgcacgucgGCaucggcgcgGGCGCgCGCCGCCa--- -3'
miRNA:   3'- -CGAUAGUa---------CG---------UCGCG-GCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 56298 0.66 0.840678
Target:  5'- aGCaGUC-UGCGGCGUCGCgCGgCGGg- -3'
miRNA:   3'- -CGaUAGuACGUCGCGGCG-GCgGCUac -5'
6503 5' -56.9 NC_001847.1 + 82129 0.66 0.840678
Target:  5'- aGCgcgCA-GCGGcCGCCGCUGUCGGc- -3'
miRNA:   3'- -CGauaGUaCGUC-GCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 1381 0.66 0.840678
Target:  5'- aGCg--CcgGCAGCaCgCGCUGCCGGUa -3'
miRNA:   3'- -CGauaGuaCGUCGcG-GCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 106310 0.66 0.840678
Target:  5'- gGCgg-CA-GCGGCGCCGUCacgcucCCGGUGa -3'
miRNA:   3'- -CGauaGUaCGUCGCGGCGGc-----GGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 104194 0.66 0.840678
Target:  5'- aGCg--CcgGCAGCaCgCGCUGCCGGUa -3'
miRNA:   3'- -CGauaGuaCGUCGcG-GCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 96348 0.66 0.840678
Target:  5'- gGCUggCGUGCGacGCGCUGCCGgCa--- -3'
miRNA:   3'- -CGAuaGUACGU--CGCGGCGGCgGcuac -5'
6503 5' -56.9 NC_001847.1 + 3497 0.66 0.840678
Target:  5'- gGCgg-CA-GCGGCGCCGUCacgcucCCGGUGa -3'
miRNA:   3'- -CGauaGUaCGUCGCGGCGGc-----GGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 69370 0.66 0.840678
Target:  5'- cGCggcgGUCuuugcgGCGGUGgCGCUGCCGGc- -3'
miRNA:   3'- -CGa---UAGua----CGUCGCgGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 83513 0.66 0.83322
Target:  5'- cGCUG-CGUGCcuuccugcgguccguGCGCCGCC-CCGGg- -3'
miRNA:   3'- -CGAUaGUACGu--------------CGCGGCGGcGGCUac -5'
6503 5' -56.9 NC_001847.1 + 121430 0.66 0.832382
Target:  5'- aGCcGUUGaGCGGCccgaCCGCCGCCGGg- -3'
miRNA:   3'- -CGaUAGUaCGUCGc---GGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 54049 0.66 0.832382
Target:  5'- --cGUCGgcgcGCGGCgagGCCGCCGCCa--- -3'
miRNA:   3'- cgaUAGUa---CGUCG---CGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 131949 0.66 0.832382
Target:  5'- aGCUggCGgaccGCuGCGCCGUCGCCu--- -3'
miRNA:   3'- -CGAuaGUa---CGuCGCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 70954 0.66 0.832382
Target:  5'- cGCg--CAUGUuccCGCCGCgGUCGGUGu -3'
miRNA:   3'- -CGauaGUACGuc-GCGGCGgCGGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.