miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 1101 0.71 0.58787
Target:  5'- cGCggccgCggGCGGCGCCGCCGCgGc-- -3'
miRNA:   3'- -CGaua--GuaCGUCGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 1156 0.69 0.67017
Target:  5'- cGCggcUCcgGCAGCGCgGCCGCgcaGAa- -3'
miRNA:   3'- -CGau-AGuaCGUCGCGgCGGCGg--CUac -5'
6503 5' -56.9 NC_001847.1 + 1381 0.66 0.840678
Target:  5'- aGCg--CcgGCAGCaCgCGCUGCCGGUa -3'
miRNA:   3'- -CGauaGuaCGUCGcG-GCGGCGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 1452 0.69 0.680405
Target:  5'- gGCcacCGUGUAGCGCacguuGCCGCCGcgGc -3'
miRNA:   3'- -CGauaGUACGUCGCGg----CGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 2039 0.69 0.689582
Target:  5'- cGCgAUC-UGCGacauccaggccacGCGCCGCCGCagCGGUGg -3'
miRNA:   3'- -CGaUAGuACGU-------------CGCGGCGGCG--GCUAC- -5'
6503 5' -56.9 NC_001847.1 + 2287 0.68 0.750406
Target:  5'- cGCcGUCG-GCGGCGggGCCGCCGGg- -3'
miRNA:   3'- -CGaUAGUaCGUCGCggCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 2438 0.72 0.478619
Target:  5'- gGCgg-CcgGCAGgGCCGCCGCCu--- -3'
miRNA:   3'- -CGauaGuaCGUCgCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 2471 0.7 0.608401
Target:  5'- aGCgggCG-GCGGCGCCcccGCCGCCGuGUGa -3'
miRNA:   3'- -CGauaGUaCGUCGCGG---CGGCGGC-UAC- -5'
6503 5' -56.9 NC_001847.1 + 2538 0.69 0.6906
Target:  5'- ----cCcgGCGGCGCuccCGCCGCCGGg- -3'
miRNA:   3'- cgauaGuaCGUCGCG---GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 2563 0.71 0.53723
Target:  5'- gGCUGUCuucgGCGcgggcgccuGCGCgGCCGCCGcgGc -3'
miRNA:   3'- -CGAUAGua--CGU---------CGCGgCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 2757 0.7 0.598123
Target:  5'- gGCg--CG-GCGGCGCCGgCGCCGGc- -3'
miRNA:   3'- -CGauaGUaCGUCGCGGCgGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 2969 0.69 0.67017
Target:  5'- ---cUCGgcgcGCAGCGCCGCCgggGCCGGc- -3'
miRNA:   3'- cgauAGUa---CGUCGCGGCGG---CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 3100 0.66 0.848782
Target:  5'- cGCgg-CcgGCAGgccgcggccCGCCGCgGCCGAg- -3'
miRNA:   3'- -CGauaGuaCGUC---------GCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 3217 0.66 0.848782
Target:  5'- gGCgcaCGUGCcuccGCGCCGCCGCgGc-- -3'
miRNA:   3'- -CGauaGUACGu---CGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 3249 0.67 0.806418
Target:  5'- uGCUcgCcgGCggcaggGGCGCCGgCGCCGc-- -3'
miRNA:   3'- -CGAuaGuaCG------UCGCGGCgGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 3307 0.66 0.815244
Target:  5'- gGCgagCGcgGCgcgGGCGCCGCUGCCGccGg -3'
miRNA:   3'- -CGauaGUa-CG---UCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 3497 0.66 0.840678
Target:  5'- gGCgg-CA-GCGGCGCCGUCacgcucCCGGUGa -3'
miRNA:   3'- -CGauaGUaCGUCGCGGCGGc-----GGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 3515 0.68 0.740647
Target:  5'- aGCU-UCGUGUAcGgGCCGUgGCCGAc- -3'
miRNA:   3'- -CGAuAGUACGU-CgCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 3747 0.73 0.44134
Target:  5'- cGCggcCGUGCAGCGCuucguCGCCGUCGAg- -3'
miRNA:   3'- -CGauaGUACGUCGCG-----GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 4983 0.66 0.856686
Target:  5'- aGCUGggGUGCGGCgGCCGCgGCa---- -3'
miRNA:   3'- -CGAUagUACGUCG-CGGCGgCGgcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.