miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 5' -56.9 NC_001847.1 + 112992 0.72 0.497831
Target:  5'- cGCUGcgCcgGCuuuugcGCGCCGCCGCCGc-- -3'
miRNA:   3'- -CGAUa-GuaCGu-----CGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 122520 0.73 0.450507
Target:  5'- gGCUGUaCGaGCAGUGCCGCCcggacccuGCCGGUc -3'
miRNA:   3'- -CGAUA-GUaCGUCGCGGCGG--------CGGCUAc -5'
6503 5' -56.9 NC_001847.1 + 22278 0.73 0.459779
Target:  5'- cGCcGUag-GCAGCGCCGCCgagGCCGAc- -3'
miRNA:   3'- -CGaUAguaCGUCGCGGCGG---CGGCUac -5'
6503 5' -56.9 NC_001847.1 + 132172 0.73 0.459779
Target:  5'- cGCggccCcgGCGGCGCUGCgCGCCGAg- -3'
miRNA:   3'- -CGaua-GuaCGUCGCGGCG-GCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 133996 0.73 0.469151
Target:  5'- cGCUGcCGgaGCcgcgcgccgaGGCGCCGCCGCUGGUGc -3'
miRNA:   3'- -CGAUaGUa-CG----------UCGCGGCGGCGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 55438 0.73 0.469151
Target:  5'- cGCgGUCcUGCAGCGCCuGgCGCCGGc- -3'
miRNA:   3'- -CGaUAGuACGUCGCGG-CgGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 131650 0.72 0.478619
Target:  5'- ----gCGUGaCGGCGCCGCUGCCGccGg -3'
miRNA:   3'- cgauaGUAC-GUCGCGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 105251 0.72 0.478619
Target:  5'- gGCgg-CcgGCAGgGCCGCCGCCu--- -3'
miRNA:   3'- -CGauaGuaCGUCgCGGCGGCGGcuac -5'
6503 5' -56.9 NC_001847.1 + 36360 0.72 0.48818
Target:  5'- cGCgcgCAcGCGGCGCCGCCGCgGc-- -3'
miRNA:   3'- -CGauaGUaCGUCGCGGCGGCGgCuac -5'
6503 5' -56.9 NC_001847.1 + 3747 0.73 0.44134
Target:  5'- cGCggcCGUGCAGCGCuucguCGCCGUCGAg- -3'
miRNA:   3'- -CGauaGUACGUCGCG-----GCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 34371 0.73 0.440429
Target:  5'- cGCUG--AUGCGGCcgaaacaacggcgGCCGCCGCCGcgGc -3'
miRNA:   3'- -CGAUagUACGUCG-------------CGGCGGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 74315 0.74 0.414488
Target:  5'- uGCUGUuuccCAUGaCGGUGCCGCUGCCGc-- -3'
miRNA:   3'- -CGAUA----GUAC-GUCGCGGCGGCGGCuac -5'
6503 5' -56.9 NC_001847.1 + 53855 0.78 0.244945
Target:  5'- cGCUGgcggCGcugGCGGCGCCGaCCGCCGcgGg -3'
miRNA:   3'- -CGAUa---GUa--CGUCGCGGC-GGCGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 46199 0.78 0.25095
Target:  5'- aGCgg-CcgGCGGCgGCCGCCGCCGGg- -3'
miRNA:   3'- -CGauaGuaCGUCG-CGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 89105 0.77 0.269694
Target:  5'- uGCgcaCAgaagGCAGCGCCGCC-CCGGUGg -3'
miRNA:   3'- -CGauaGUa---CGUCGCGGCGGcGGCUAC- -5'
6503 5' -56.9 NC_001847.1 + 61641 0.76 0.317783
Target:  5'- cGCUGgacUGCAGCGCCGCCaCCGcgGc -3'
miRNA:   3'- -CGAUaguACGUCGCGGCGGcGGCuaC- -5'
6503 5' -56.9 NC_001847.1 + 50376 0.76 0.317783
Target:  5'- cGCUAag--GaCGGCGCCGCCGCCGGc- -3'
miRNA:   3'- -CGAUaguaC-GUCGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 19329 0.75 0.363918
Target:  5'- gGCUGUUAacGCaAGCGCCGCgGCCGGg- -3'
miRNA:   3'- -CGAUAGUa-CG-UCGCGGCGgCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 87510 0.74 0.388664
Target:  5'- uGCUugcaCGUGCc-CGCCGCCGCCGAa- -3'
miRNA:   3'- -CGAua--GUACGucGCGGCGGCGGCUac -5'
6503 5' -56.9 NC_001847.1 + 43488 0.74 0.405762
Target:  5'- cGC-GUCccGCcGCGCCGCCGUCGAUc -3'
miRNA:   3'- -CGaUAGuaCGuCGCGGCGGCGGCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.