Results 1 - 20 of 351 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6503 | 5' | -56.9 | NC_001847.1 | + | 81282 | 0.66 | 0.85979 |
Target: 5'- cGCggcgGUCG-GCgccgccagcgccgccAGCGCCGCCGCUGc-- -3' miRNA: 3'- -CGa---UAGUaCG---------------UCGCGGCGGCGGCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 56298 | 0.66 | 0.840678 |
Target: 5'- aGCaGUC-UGCGGCGUCGCgCGgCGGg- -3' miRNA: 3'- -CGaUAGuACGUCGCGGCG-GCgGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 49492 | 0.66 | 0.840678 |
Target: 5'- uGCUgAUCAcccUGauCGGCGCCGCuuCGCCGGg- -3' miRNA: 3'- -CGA-UAGU---AC--GUCGCGGCG--GCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 11399 | 1.09 | 0.001914 |
Target: 5'- uGCUAUCAUGCAGCGCCGCCGCCGAUGc -3' miRNA: 3'- -CGAUAGUACGUCGCGGCGGCGGCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 99239 | 0.66 | 0.856686 |
Target: 5'- aGCUccCAcGCGccgucccacGcCGCCGCCGCCGAc- -3' miRNA: 3'- -CGAuaGUaCGU---------C-GCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 94831 | 0.66 | 0.856686 |
Target: 5'- aGCUAUCG-GUGGCGUCGgagucugCGCCGAg- -3' miRNA: 3'- -CGAUAGUaCGUCGCGGCg------GCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 78248 | 0.66 | 0.848782 |
Target: 5'- cGCccgCcgGCGuCGCCGUCGCCGGc- -3' miRNA: 3'- -CGauaGuaCGUcGCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 29172 | 0.66 | 0.848782 |
Target: 5'- cGCUGgag-GCGGCccGCCgcGCCGCCGGc- -3' miRNA: 3'- -CGAUaguaCGUCG--CGG--CGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 3100 | 0.66 | 0.848782 |
Target: 5'- cGCgg-CcgGCAGgccgcggccCGCCGCgGCCGAg- -3' miRNA: 3'- -CGauaGuaCGUC---------GCGGCGgCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 82129 | 0.66 | 0.840678 |
Target: 5'- aGCgcgCA-GCGGcCGCCGCUGUCGGc- -3' miRNA: 3'- -CGauaGUaCGUC-GCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 35508 | 0.66 | 0.846371 |
Target: 5'- uGCUcggCGUGC-GCGCCGgggcuuguauuuuuCCGCCGGa- -3' miRNA: 3'- -CGAua-GUACGuCGCGGC--------------GGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 60039 | 0.66 | 0.848782 |
Target: 5'- ---cUCggGCAaGCGCCggggcGCCGCCGAc- -3' miRNA: 3'- cgauAGuaCGU-CGCGG-----CGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 52086 | 0.66 | 0.856686 |
Target: 5'- cGCUcUUcgGCcGCGCCGCgGCCc--- -3' miRNA: 3'- -CGAuAGuaCGuCGCGGCGgCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 80525 | 0.66 | 0.840678 |
Target: 5'- cGCUGUCGgcgcacgucgGCaucggcgcgGGCGCgCGCCGCCa--- -3' miRNA: 3'- -CGAUAGUa---------CG---------UCGCG-GCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 80653 | 0.66 | 0.856686 |
Target: 5'- ----cCcgGCcccGGCGCCGCCGUCGuUGu -3' miRNA: 3'- cgauaGuaCG---UCGCGGCGGCGGCuAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 98774 | 0.66 | 0.848782 |
Target: 5'- cGCUGccCGggccgcgGCGGCGCCGCguggcgCGCCGcgGc -3' miRNA: 3'- -CGAUa-GUa------CGUCGCGGCG------GCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 127039 | 0.66 | 0.840678 |
Target: 5'- cGCg--CcUGCgcuGGCGCCGCguCGCCGAUc -3' miRNA: 3'- -CGauaGuACG---UCGCGGCG--GCGGCUAc -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 1381 | 0.66 | 0.840678 |
Target: 5'- aGCg--CcgGCAGCaCgCGCUGCCGGUa -3' miRNA: 3'- -CGauaGuaCGUCGcG-GCGGCGGCUAc -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 4983 | 0.66 | 0.856686 |
Target: 5'- aGCUGggGUGCGGCgGCCGCgGCa---- -3' miRNA: 3'- -CGAUagUACGUCG-CGGCGgCGgcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 91197 | 0.66 | 0.848782 |
Target: 5'- cGC-GUCGcGC-GCGUCGCCGUCGGa- -3' miRNA: 3'- -CGaUAGUaCGuCGCGGCGGCGGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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