Results 21 - 40 of 351 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6503 | 5' | -56.9 | NC_001847.1 | + | 104640 | 0.66 | 0.832382 |
Target: 5'- aCUGUCGUcUAGCGCgCGCCcgagggccgcGCCGAUc -3' miRNA: 3'- cGAUAGUAcGUCGCG-GCGG----------CGGCUAc -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 49492 | 0.66 | 0.840678 |
Target: 5'- uGCUgAUCAcccUGauCGGCGCCGCuuCGCCGGg- -3' miRNA: 3'- -CGA-UAGU---AC--GUCGCGGCG--GCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 60039 | 0.66 | 0.848782 |
Target: 5'- ---cUCggGCAaGCGCCggggcGCCGCCGAc- -3' miRNA: 3'- cgauAGuaCGU-CGCGG-----CGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 4983 | 0.66 | 0.856686 |
Target: 5'- aGCUGggGUGCGGCgGCCGCgGCa---- -3' miRNA: 3'- -CGAUagUACGUCG-CGGCGgCGgcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 132673 | 0.66 | 0.815244 |
Target: 5'- gGCgg-CG-GgGGCGCCGCCGCCc--- -3' miRNA: 3'- -CGauaGUaCgUCGCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 116586 | 0.66 | 0.832382 |
Target: 5'- uGCgcUCugggcGCAGCGCUGCCGCUc--- -3' miRNA: 3'- -CGauAGua---CGUCGCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 56298 | 0.66 | 0.840678 |
Target: 5'- aGCaGUC-UGCGGCGUCGCgCGgCGGg- -3' miRNA: 3'- -CGaUAGuACGUCGCGGCG-GCgGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 80653 | 0.66 | 0.856686 |
Target: 5'- ----cCcgGCcccGGCGCCGCCGUCGuUGu -3' miRNA: 3'- cgauaGuaCG---UCGCGGCGGCGGCuAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 29136 | 0.66 | 0.832382 |
Target: 5'- aGCUggCGgaccGCuGCGCCGUCGCCu--- -3' miRNA: 3'- -CGAuaGUa---CGuCGCGGCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 52086 | 0.66 | 0.856686 |
Target: 5'- cGCUcUUcgGCcGCGCCGCgGCCc--- -3' miRNA: 3'- -CGAuAGuaCGuCGCGGCGgCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 1381 | 0.66 | 0.840678 |
Target: 5'- aGCg--CcgGCAGCaCgCGCUGCCGGUa -3' miRNA: 3'- -CGauaGuaCGUCGcG-GCGGCGGCUAc -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 100855 | 0.66 | 0.832382 |
Target: 5'- cGCUGaCGgccgcgagcGCGGCGCCcaGCCGCCGc-- -3' miRNA: 3'- -CGAUaGUa--------CGUCGCGG--CGGCGGCuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 80525 | 0.66 | 0.840678 |
Target: 5'- cGCUGUCGgcgcacgucgGCaucggcgcgGGCGCgCGCCGCCa--- -3' miRNA: 3'- -CGAUAGUa---------CG---------UCGCG-GCGGCGGcuac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 3100 | 0.66 | 0.848782 |
Target: 5'- cGCgg-CcgGCAGgccgcggccCGCCGCgGCCGAg- -3' miRNA: 3'- -CGauaGuaCGUC---------GCGGCGgCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 78248 | 0.66 | 0.848782 |
Target: 5'- cGCccgCcgGCGuCGCCGUCGCCGGc- -3' miRNA: 3'- -CGauaGuaCGUcGCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 99239 | 0.66 | 0.856686 |
Target: 5'- aGCUccCAcGCGccgucccacGcCGCCGCCGCCGAc- -3' miRNA: 3'- -CGAuaGUaCGU---------C-GCGGCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 38497 | 0.66 | 0.815244 |
Target: 5'- --cGUCGccgggggGCGGCGCgGUCGCCGGc- -3' miRNA: 3'- cgaUAGUa------CGUCGCGgCGGCGGCUac -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 97757 | 0.66 | 0.815244 |
Target: 5'- cGCUgAUCGuUGuCAGCGCa-CCGCCGggGa -3' miRNA: 3'- -CGA-UAGU-AC-GUCGCGgcGGCGGCuaC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 53121 | 0.66 | 0.815244 |
Target: 5'- cGC-GUCGgcCAGCGCCGaCUGCgCGGUGa -3' miRNA: 3'- -CGaUAGUacGUCGCGGC-GGCG-GCUAC- -5' |
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6503 | 5' | -56.9 | NC_001847.1 | + | 111222 | 0.66 | 0.826465 |
Target: 5'- aGCaagGUCAcgaugagcggcgagcUGCuGCGCCcgaaccuGCCGCUGAUGc -3' miRNA: 3'- -CGa--UAGU---------------ACGuCGCGG-------CGGCGGCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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