Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6504 | 3' | -54.8 | NC_001847.1 | + | 100608 | 0.74 | 0.503165 |
Target: 5'- gCAGCCCGGCCAgGCUCggGCccuGGCg -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaaCGuc-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 14381 | 0.74 | 0.473657 |
Target: 5'- aCGGCCgCGGCCGUGgUggcCUUGCAGGAg -3' miRNA: 3'- gGUCGG-GUCGGUACgA---GAACGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 64155 | 0.75 | 0.435721 |
Target: 5'- gCGGCCC-GCCAUGCaggccgCUUGCGcGGACg -3' miRNA: 3'- gGUCGGGuCGGUACGa-----GAACGU-CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 27904 | 0.79 | 0.268913 |
Target: 5'- gCCGGCCCGGCC--GCgCUUGCGGAGg -3' miRNA: 3'- -GGUCGGGUCGGuaCGaGAACGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 67905 | 0.8 | 0.220402 |
Target: 5'- gCCGGCCCAGUgGUcGCUCUU-CAGGACg -3' miRNA: 3'- -GGUCGGGUCGgUA-CGAGAAcGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 16911 | 0.71 | 0.648424 |
Target: 5'- aCCAGCCCgGGCC--GCUCggcGCAGAc- -3' miRNA: 3'- -GGUCGGG-UCGGuaCGAGaa-CGUCUug -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 85037 | 0.7 | 0.679957 |
Target: 5'- cCCAGCCCGGCCcccaGCagCUgGCcGAGCa -3' miRNA: 3'- -GGUCGGGUCGGua--CGa-GAaCGuCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 95752 | 0.69 | 0.747628 |
Target: 5'- -gAGCCCGGCCGgcgccgGCUCcccgacggcgucGCGGAGCu -3' miRNA: 3'- ggUCGGGUCGGUa-----CGAGaa----------CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104164 | 0.69 | 0.741626 |
Target: 5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3' miRNA: 3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 85277 | 0.69 | 0.741626 |
Target: 5'- gCGGCCaAGaCCAUGaUCUUGUGGGACa -3' miRNA: 3'- gGUCGGgUC-GGUACgAGAACGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 60676 | 0.7 | 0.721369 |
Target: 5'- aCAcGCCCAGCCcccGCUCguacUGCAGcGCc -3' miRNA: 3'- gGU-CGGGUCGGua-CGAGa---ACGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 16202 | 0.7 | 0.721369 |
Target: 5'- aCUGGCCCGcGCCAUGCggCgUUGCAGc-- -3' miRNA: 3'- -GGUCGGGU-CGGUACGa-G-AACGUCuug -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 10135 | 0.7 | 0.721369 |
Target: 5'- gCgGGCCCGGCCGUaGCgCgaGCGGGAg -3' miRNA: 3'- -GgUCGGGUCGGUA-CGaGaaCGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 38384 | 0.7 | 0.711113 |
Target: 5'- aCCGGCaCUGGCaCcgGCUUcgGCGGAGCc -3' miRNA: 3'- -GGUCG-GGUCG-GuaCGAGaaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 109437 | 0.7 | 0.711113 |
Target: 5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3' miRNA: 3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 53073 | 0.7 | 0.700786 |
Target: 5'- cCCAgacGCCgAGCCcgGCUCagcguucgGCGGGGCg -3' miRNA: 3'- -GGU---CGGgUCGGuaCGAGaa------CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 97881 | 0.7 | 0.700786 |
Target: 5'- gCCGcCCCGGCCGUGCUgCUccaGGAACg -3' miRNA: 3'- -GGUcGGGUCGGUACGA-GAacgUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 55764 | 0.7 | 0.690397 |
Target: 5'- gCGGCCguGCCcugaguacggGCUCggGCGGAACu -3' miRNA: 3'- gGUCGGguCGGua--------CGAGaaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 48169 | 0.7 | 0.690397 |
Target: 5'- gCCGGCCCGGCCGgcgGCgUCcUGCuGuGCc -3' miRNA: 3'- -GGUCGGGUCGGUa--CG-AGaACGuCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 98183 | 0.7 | 0.689355 |
Target: 5'- cCCAGUCCucuaggcAGCCGUGCgacggccGCGGAGCu -3' miRNA: 3'- -GGUCGGG-------UCGGUACGagaa---CGUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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