Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6504 | 3' | -54.8 | NC_001847.1 | + | 35412 | 0.66 | 0.903136 |
Target: 5'- gCCGGCUCGGCCuacgagGCgcagaUGCuGAGCa -3' miRNA: 3'- -GGUCGGGUCGGua----CGaga--ACGuCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 35550 | 0.66 | 0.915013 |
Target: 5'- gCAGCCCcgcGCCAaGCUUggcgUGCgcgcuuuGGAGCg -3' miRNA: 3'- gGUCGGGu--CGGUaCGAGa---ACG-------UCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 36859 | 0.66 | 0.896524 |
Target: 5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3' miRNA: 3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 38384 | 0.7 | 0.711113 |
Target: 5'- aCCGGCaCUGGCaCcgGCUUcgGCGGAGCc -3' miRNA: 3'- -GGUCG-GGUCG-GuaCGAGaaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 39490 | 0.73 | 0.55399 |
Target: 5'- aCCAGCCC-GCCGcgcagGCUCccGguGAACa -3' miRNA: 3'- -GGUCGGGuCGGUa----CGAGaaCguCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 41094 | 0.67 | 0.851867 |
Target: 5'- gCCGGCCCAGCUgcgccugcacGUGgUUggcGCGGAAg -3' miRNA: 3'- -GGUCGGGUCGG----------UACgAGaa-CGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 42020 | 0.66 | 0.9095 |
Target: 5'- gCAGCCCGGCCA-GCUUcgccCGGuACg -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaac-GUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 48169 | 0.7 | 0.690397 |
Target: 5'- gCCGGCCCGGCCGgcgGCgUCcUGCuGuGCc -3' miRNA: 3'- -GGUCGGGUCGGUa--CG-AGaACGuCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 49120 | 0.67 | 0.843645 |
Target: 5'- aCCAGCgCAGCaGUGCcgucgUCUUGCccGAGCc -3' miRNA: 3'- -GGUCGgGUCGgUACG-----AGAACGu-CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 50386 | 0.71 | 0.648424 |
Target: 5'- gCUGGCCgUGGCCAUGCUCgugcUGCGGuugguGCg -3' miRNA: 3'- -GGUCGG-GUCGGUACGAGa---ACGUCu----UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 52766 | 0.67 | 0.851867 |
Target: 5'- aCCAGCCCgcaggucacgcGGCgCGcGCUCaugUGCAGuGCg -3' miRNA: 3'- -GGUCGGG-----------UCG-GUaCGAGa--ACGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 53073 | 0.7 | 0.700786 |
Target: 5'- cCCAgacGCCgAGCCcgGCUCagcguucgGCGGGGCg -3' miRNA: 3'- -GGU---CGGgUCGGuaCGAGaa------CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 53110 | 0.66 | 0.9095 |
Target: 5'- gCGGCCC-GCCAgcgGCUgCUUGCcauccucGGGCa -3' miRNA: 3'- gGUCGGGuCGGUa--CGA-GAACGu------CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 55764 | 0.7 | 0.690397 |
Target: 5'- gCGGCCguGCCcugaguacggGCUCggGCGGAACu -3' miRNA: 3'- gGUCGGguCGGua--------CGAGaaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 56845 | 0.67 | 0.875234 |
Target: 5'- gCGGCCCAGCCGcccgagcaccGC-CUcGCAGAGg -3' miRNA: 3'- gGUCGGGUCGGUa---------CGaGAaCGUCUUg -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 57003 | 0.69 | 0.771223 |
Target: 5'- gCC-GCCUGGCCAcguccuggUGC-CUgcUGCAGAACa -3' miRNA: 3'- -GGuCGGGUCGGU--------ACGaGA--ACGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 59201 | 0.66 | 0.903136 |
Target: 5'- gUAGCCCGagccguccgcGCCGUGCgCUUGCAc--- -3' miRNA: 3'- gGUCGGGU----------CGGUACGaGAACGUcuug -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 59327 | 0.72 | 0.616765 |
Target: 5'- gCCGGCggcgccguaCCAGCCcgGCaUCggggGCGGAGCg -3' miRNA: 3'- -GGUCG---------GGUCGGuaCG-AGaa--CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 60482 | 0.67 | 0.843645 |
Target: 5'- gCGGCUCGGCCG-GCUCcaggcGCAGcAGCu -3' miRNA: 3'- gGUCGGGUCGGUaCGAGaa---CGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 60676 | 0.7 | 0.721369 |
Target: 5'- aCAcGCCCAGCCcccGCUCguacUGCAGcGCc -3' miRNA: 3'- gGU-CGGGUCGGua-CGAGa---ACGUCuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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