miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 16472 0.67 0.875234
Target:  5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3'
miRNA:   3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 16911 0.71 0.648424
Target:  5'- aCCAGCCCgGGCC--GCUCggcGCAGAc- -3'
miRNA:   3'- -GGUCGGG-UCGGuaCGAGaa-CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 17310 0.67 0.859876
Target:  5'- -aGGUCgGGCCGguccGCUCUuguggUGCAGGGCc -3'
miRNA:   3'- ggUCGGgUCGGUa---CGAGA-----ACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 17747 0.71 0.627317
Target:  5'- gCGGCCaCGGCCucgcGCUC--GCAGAGCa -3'
miRNA:   3'- gGUCGG-GUCGGua--CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 20492 0.67 0.851867
Target:  5'- aCGGCCUguauGCUAUGCUCccGCcGGACu -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 22173 0.72 0.616765
Target:  5'- gCGGgCCGGCC-UGCUCggGCgAGAGCu -3'
miRNA:   3'- gGUCgGGUCGGuACGAGaaCG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 25772 0.68 0.798709
Target:  5'- gCAGCCCAGCUgcgcccauuccgcGUGCUCg-GCcucGAGCu -3'
miRNA:   3'- gGUCGGGUCGG-------------UACGAGaaCGu--CUUG- -5'
6504 3' -54.8 NC_001847.1 + 26535 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5'
6504 3' -54.8 NC_001847.1 + 27662 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 27904 0.79 0.268913
Target:  5'- gCCGGCCCGGCC--GCgCUUGCGGAGg -3'
miRNA:   3'- -GGUCGGGUCGGuaCGaGAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 28348 0.69 0.751607
Target:  5'- gCAGCgCGGCCGUcauccgcccGCUgcUGCAGAGCc -3'
miRNA:   3'- gGUCGgGUCGGUA---------CGAgaACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 28532 0.66 0.9095
Target:  5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3'
miRNA:   3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 28638 0.69 0.771223
Target:  5'- -gGGCCCgcGGCCGUGUUCgUGCcggagauggGGGACg -3'
miRNA:   3'- ggUCGGG--UCGGUACGAGaACG---------UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 29770 0.67 0.867668
Target:  5'- gUCGGCCCuggcGGCCggGCUCUgGCcguuuguGGACg -3'
miRNA:   3'- -GGUCGGG----UCGGuaCGAGAaCGu------CUUG- -5'
6504 3' -54.8 NC_001847.1 + 30674 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 31918 0.68 0.817785
Target:  5'- aCGGCCgCGGCCGcgGCUCcgcgGCGGGuaaGCg -3'
miRNA:   3'- gGUCGG-GUCGGUa-CGAGaa--CGUCU---UG- -5'
6504 3' -54.8 NC_001847.1 + 33074 0.7 0.721369
Target:  5'- gCGGCCCGcGCC-UGCcCUUGCugccGAACa -3'
miRNA:   3'- gGUCGGGU-CGGuACGaGAACGu---CUUG- -5'
6504 3' -54.8 NC_001847.1 + 33586 0.67 0.867668
Target:  5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3'
miRNA:   3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 33999 0.67 0.843645
Target:  5'- -gGGCCCAGCCuucgcgGCgg-UGCuGGGCa -3'
miRNA:   3'- ggUCGGGUCGGua----CGagaACGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 34541 0.69 0.741626
Target:  5'- cCCgAGCCUGGCCGggcUGCUCggccgcUGCAGcGGCg -3'
miRNA:   3'- -GG-UCGGGUCGGU---ACGAGa-----ACGUC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.